Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242107g00006 ATGAGGAAGAAGCTCGATACTCGTTTCCCTGCGGCTCGGATAAAGAAGATAATGCAAGCAGATGAAGATGTTGGAAAGATAGCACTTGCTGTTCCTGTTTTAGTTTCTAAAGCTCTGGAGCTATTTTTGCAAGACCTATGTAACCGCACGTATGATATAACTCTTCAGAGAGGAGCAAAGACCATGAACTCATTGCATTTAAAACATTGTGTACAAAGCTACAATGTCTTTGATTTTCTGAGGGATGTCGTCAGTAGGGTTCCTGACTATGGCCATGGCCATGGCCATGCAGAAGCTGGATCTGATGATCGGGTCCTTTATAAAAGGAGGAAGGCTGCTATTGATGATGGTAACGACAGCGATGAAGAGGCTAAAAGGAGCAAAATGCATGAGCTAAGCCACACTGGTAGCACTGGAAGGGGAAGGGGCCGAGGTAGAGGAAGAGGCCGAGGCCGAGGAGCTAGAACTGCAGAAAGAGAGGCATATCGTCCGGAACCTGAAATTGAGCCTCGTGCTTCATTTCCAGAGAGCAGTCAACATAATAGTAGCACAGCTGTGGCAGTATTTGATGGTTCACAGTCAGAGGAGTTACCAAAGGAGAATATTGCTGCCGTAGTCACTACTGAAAGCTCCGAGGTGCTCCCAAATGCTGTTCCTGGTTCTGACACAAACCAAAACCAGGACAAAAATGATAGCACAGCAGGTGCAGCCACAGCTGCAACCGCAACTGGTGCCTCGTTACCTGAACCTGTAAAGGAGAGCAAGCACGAGGAAATTCCCGGATGGTCTCTCTCTGACGTGGACAAGATGGCCATCGACTCAATTCAGCTTGCACAACTCAGTGGTCGACTAGAAGTTGACGAAGAAGATTATGATGAGGAAGGGTAA 888 0.473 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYGHGHGHAEAGSDDRVLYKRRKAAIDDGNDSDEEAKRSKMHELSHTGSTGRGRGRGRGRGRGRGARTAEREAYRPEPEIEPRASFPESSQHNSSTAVAVFDGSQSEELPKENIAAVVTTESSEVLPNAVPGSDTNQNQDKNDSTAGAATAATATGASLPEPVKESKHEEIPGWSLSDVDKMAIDSIQLAQLSGRLEVDEEDYDEEG 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242107g00006 295 MobiDBLite consensus disorder prediction 204 240 - -
Stsc242107g00006 295 FunFam dr1-associated corepressor homolog 1 86 - -
Stsc242107g00006 295 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Stsc242107g00006 295 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Stsc242107g00006 295 MobiDBLite consensus disorder prediction 174 190 - -
Stsc242107g00006 295 MobiDBLite consensus disorder prediction 116 137 - -
Stsc242107g00006 295 MobiDBLite consensus disorder prediction 151 170 - -
Stsc242107g00006 295 MobiDBLite consensus disorder prediction 116 266 - -
Stsc242107g00006 295 SUPERFAMILY Histone-fold 4 97 IPR009072 GO:0046982
Stsc242107g00006 295 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242107g00006 Stsc-Chr242107 31045 35058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242107g00006 1 284 CCAAT-HAP5 Transcription Factor Family AT3G12480 48.621 1.09e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc242107g00006 CBFD_NFYB_HMF 3.4e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242107g00006 K21752 - gmx:100801593 381.719