Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242106g00003 ATGGCTCTGCAACTACAATCTTCCTCCTCCTCCTCTTCCACTCATTCAACTTCTTTTTCTTCCTCCTCTTTCAACCATACTTACGAGTATGATGTGTTTATTAGTTTCAGAGGTGAAGATACTCGCTATGGTTTTACCGGCTCTCTTTATGAAGCTCTTTCTAATAAAGGAATCCATGCTTTCATTGATGATGAGGAGCTTCCAAAAGGGAACAAAATCAGACCCTCACTTGGAAGCTCAATTAAAGATTCTAGGATTGCCATCATTGTCCTTTCTCCTAACTATGCTTCTTCTTCTTTTTGCTTAGACGAGCTTGTCCAAATCGTTCGCTACATCAAGGGAAATAATCGGTTGGTTTTGCCGGTTTTCTATAAGGTTGATCCTTCTGATGTTCGCCATCTAAAAAAGAGTTATGGAGAGGCGATGACTAAGCATGAGGAGAGATTCCAGAATTACATGAACAAGGTGCTCAAATGGAAGAAGGCTCTGCATCAAGTTGCTAATTTGTCTGGCTATCATTTCAAAGATGGGGTTGGATATGAACATAAATTTATTAAAAAGATTGTGGAAAACATTTCCACAAAGGTTAGGTTTGTAACTTTGCATGTTGCTGATTACCCTGTTGGACTAGAATCTCGAGTGCCAAAATTAATTTCCCTTTTGAAAATGGGTTCTAGTGGTCGAGTTCACATGGTGGGGATACATGGAATTGGTGGCATAGGAAAAACAACACTTGCTATTGCGGTTTATAACCTGATTGCTAACAATTTTGAAGGTGTGTGCTTTGTTGAAAATGTGAGAGAAAATTCAAATAAATATGGGTTAGTACATCTTCAAAATATCATTCTTTCTAAAATAATTGGGAAGGATGAAGTCCATATTGTAGGTGTTAAAGAAGGAACCTCACTGATACAACAAAGGCTTTGTCGAAAGAAAGTTCTTTTGGTTCTGGATGACGTTGATGATCGCAGGCAGCTACAAGCTGTTGCTGGAAAACTTGATTGGTTTGGTCCTGGCAGCAGATTTATCATTACAACACGTGACACACATTTGCTGAAATGTCATGGTGTTCGAGATACATATGAGGTAGACAATTTAAACAAGCGTGACTCTTTCCAATTGCTTATTAAAAAAGCTTTTGAAAATGACAATGTTAGCCCAAGTTACACAGATGTTTTAAATCGTGCAATAGCTTATGCCTCGGGACATCCACTGGCTTTAGAAATAATAGGCTCCAACTTGTTTGGAAAAGAAGTACAAGTTTGGGAATCTGCATTGGATCATTTTGAAAAACATCTCGACAATACAGTGCATGAGATACTTCGAGTAAGTTTTGATGCTTTGGGAAAAGAAGAGCAAAATGTTTTCCTAGATATTGCTTGTTGTTTTAAAGGATATTCATTATTGGAAGTTTCAATTCTACTTCAAGCTCATTATGGGAGTTGCATGAAATATCATATTGATGTGTTGGTTGAAAAATCTCTCATAAAGACTGATAGGGATGAAAGAGTGACAATGCATGATTTGATGGAGGAATTGGGTAAAGAAATTGTTTTTGAAAAATCCCCAGAAATGCCTGGAAAACGTAGTAGATTATGGTTCTACAAAGATATAGTTAAGGTTTTAGAAGATAATCAAGGGACTAGCGCCATTGAAATTATATACTTGGAATTTCCCTTACTTGAAAGTGGAGAAGTGAAATGGGATGGAAAAGCTTTTAAAGAGATGAAAAATCTGAAAACACTTATAATAAAAAATGATTGTTTTTCCAGAAGTCTCCAAACATCTTCCAAACAGTTTAAGAATATTGGAATGGCCGAAATATCCTTCGGAGTATTTTCCATATGA 1848 0.3669 MALQLQSSSSSSSTHSTSFSSSSFNHTYEYDVFISFRGEDTRYGFTGSLYEALSNKGIHAFIDDEELPKGNKIRPSLGSSIKDSRIAIIVLSPNYASSSFCLDELVQIVRYIKGNNRLVLPVFYKVDPSDVRHLKKSYGEAMTKHEERFQNYMNKVLKWKKALHQVANLSGYHFKDGVGYEHKFIKKIVENISTKVRFVTLHVADYPVGLESRVPKLISLLKMGSSGRVHMVGIHGIGGIGKTTLAIAVYNLIANNFEGVCFVENVRENSNKYGLVHLQNIILSKIIGKDEVHIVGVKEGTSLIQQRLCRKKVLLVLDDVDDRRQLQAVAGKLDWFGPGSRFIITTRDTHLLKCHGVRDTYEVDNLNKRDSFQLLIKKAFENDNVSPSYTDVLNRAIAYASGHPLALEIIGSNLFGKEVQVWESALDHFEKHLDNTVHEILRVSFDALGKEEQNVFLDIACCFKGYSLLEVSILLQAHYGSCMKYHIDVLVEKSLIKTDRDERVTMHDLMEELGKEIVFEKSPEMPGKRSRLWFYKDIVKVLEDNQGTSAIEIIYLEFPLLESGEVKWDGKAFKEMKNLKTLIIKNDCFSRSLQTSSKQFKNIGMAEISFGVFSI 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242106g00003 615 Gene3D - 28 194 IPR035897 -
Stsc242106g00003 615 SMART till_3 29 169 IPR000157 GO:0007165
Stsc242106g00003 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 459 IPR027417 -
Stsc242106g00003 615 Pfam TIR domain 30 196 IPR000157 GO:0007165
Stsc242106g00003 615 MobiDBLite consensus disorder prediction 1 22 - -
Stsc242106g00003 615 Gene3D - 195 358 IPR027417 -
Stsc242106g00003 615 Pfam NB-ARC domain 214 439 IPR002182 GO:0043531
Stsc242106g00003 615 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 172 IPR035897 -
Stsc242106g00003 615 Gene3D - 365 449 IPR042197 -
Stsc242106g00003 615 ProSiteProfiles TIR domain profile. 28 196 IPR000157 GO:0007165
Stsc242106g00003 615 FunFam Disease resistance protein (TIR-NBS-LRR class) 26 198 - -
Stsc242106g00003 615 PRINTS Disease resistance protein signature 400 414 - -
Stsc242106g00003 615 PRINTS Disease resistance protein signature 307 321 - -
Stsc242106g00003 615 PRINTS Disease resistance protein signature 231 246 - -
Stsc242106g00003 615 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 30 595 IPR044974 GO:0006952
Stsc242106g00003 615 SUPERFAMILY "Winged helix" DNA-binding domain 436 543 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242106g00003 Stsc-Chr242106 10830 12870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242106g00003 24 582 WRKY Transcription Factor Family AT4G12020 29.247 4.56e-51 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242106g00003 - - aip:107644584 785.408