Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242105g00001 ATGGACGGTGTGTTCTTCCTGCCAGAAGCAGCCAGAGCGGGTTACCTGCGCTCTACGGCGCAGTCTTTTGGATGTGCCTACATTTGTCTCTGGTCCTTTGATCCCACTTCTTCTCCTAATAATCGGTTGTTCTTCTTGGATGGTTTCTACAACCAAGCAAGCTCTTCTTTGGGGAGTGTGGCCCAACGCCTCTTTAATCAGTTCAGGACTTTAACATTTCATGCCAATGATGACGGTATTCCTGGACTAGCTTTTAGGAACAACCGTCCGTACGTAGAGGTGCAGCAACCACAACTTCTCACACTCGCATGGACTCAAATACAAAAACAATTCTATCAGGAAGCAAGGATTAAGACTGCTGTATTCATGGGGTGCAACAAAGGGGAAATTGAGCTTGGTTTCTTAAACATGTCTCAAGCAGAAATTCAAACAGCACTTAGCAGTTTGTTCCCAGAAGATTTCTCTTCCACTGCTGCGCGGCAAATAGTGGATCATCAGAACAATCCGCCATCATCATCTTCATCTTCTTTGAGATCACTGTCCACAACAGCAGGGAGCCCTGAGTACTCCTCTCTCATATTCAACGTTCCCCCGGCTCCGGCGGCAGCGGTGGCGAACACAATTTCGCCTTTGTCATCGAACACAGCACCAGCATTGCTAACTCATTCATCAACAATAACAACTCCTCATTACATGTTCCCGAATCAGGAGATCGAGAACGAGACACTGATGAGAGTGTTCTTGAACGCTATATCGTCATCACCTCATCAACATCAAAACTTGCCTTATAACATCACGGTGGTGCACCCGGAGAGCAGCGCTTTCAGGCGGTACAGGACGGAACAGGAGGCAGGAACGAGTGGGTCGTCGGTTAGTTTGCGGAGTAGGCAAAGCCTTATGAAGAGATCGTTAGCGTTCTTTAGGAGTATCAATGCGATGAGAATAAGGGAACGGATTCAAGCCACCCGGCCCTCAAGTACGCAGCTTCATCATATGATTGCTGAGAGAAGAAGACGAGAGAAGCTTAACGATAACTTTCAGGCCCTTAGAGCATTGCTTCCTCATGGAACTAAGAAAGACAAAGCGTCTATACTAACAACTGCAAAGGAGACACTGAGTTCATTGATGGCTGAAATTGAAAAGCTAAGGATAAGAAATCAGGAGCTTGAATCACGTTTGCCTGACGAGAGCAAAGAATCAACAAGCACCAAAACTATGTTAATTGTGCCACCAAATGAGAGATTTCATGTCCAAATTTCAGATGTGCCACAATCATCATCATCAGAAGAGAGGAGGGTGGATTTGCAAGTGGCTTTGAGGGGCCAAATTTCTCATATTGATGTGGTGATTCGGTTATTGGAGTTCTTGAATCTGGCTCAGAATGTGAGCTTGCTTAGCATGAGAACAAATACCAATAACAATGTTGGTGAAGGGAATAATTCTATTAATCAACTAACATTCAGATTAAGGATTCTTGAGGGAAGTGAATGGGATGTTTCTGCCTTCCAAGAAGCAGTGAGAAGAGTTGTTGGTGAGTTGGTACAGTTCCAATAA 1554 0.4505 MDGVFFLPEAARAGYLRSTAQSFGCAYICLWSFDPTSSPNNRLFFLDGFYNQASSSLGSVAQRLFNQFRTLTFHANDDGIPGLAFRNNRPYVEVQQPQLLTLAWTQIQKQFYQEARIKTAVFMGCNKGEIELGFLNMSQAEIQTALSSLFPEDFSSTAARQIVDHQNNPPSSSSSSLRSLSTTAGSPEYSSLIFNVPPAPAAAVANTISPLSSNTAPALLTHSSTITTPHYMFPNQEIENETLMRVFLNAISSSPHQHQNLPYNITVVHPESSAFRRYRTEQEAGTSGSSVSLRSRQSLMKRSLAFFRSINAMRIRERIQATRPSSTQLHHMIAERRRREKLNDNFQALRALLPHGTKKDKASILTTAKETLSSLMAEIEKLRIRNQELESRLPDESKESTSTKTMLIVPPNERFHVQISDVPQSSSSEERRVDLQVALRGQISHIDVVIRLLEFLNLAQNVSLLSMRTNTNNNVGEGNNSINQLTFRLRILEGSEWDVSAFQEAVRRVVGELVQFQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242105g00001 517 Gene3D - 325 400 IPR036638 GO:0046983
Stsc242105g00001 517 SMART finulus 332 381 IPR011598 GO:0046983
Stsc242105g00001 517 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 105 510 IPR044658 -
Stsc242105g00001 517 Pfam Helix-loop-helix DNA-binding domain 330 375 IPR011598 GO:0046983
Stsc242105g00001 517 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 326 375 IPR011598 GO:0046983
Stsc242105g00001 517 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 326 392 IPR036638 GO:0046983
Stsc242105g00001 517 Coils Coil 365 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242105g00001 Stsc-Chr242105 5206 8959 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242105g00001 1 515 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 39.162 8.13e-99 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc242105g00001 HLH 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242105g00001 - - ahf:112790359 780.4