Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242093g00006 ATGGCGGATCACTCCGATTCTTCTCCTCTCGTCCCTCCCATACCTCTCTCTGATCCTTCCGAGATCGATCTTGAAGCTGGTCCATCCGAACAGATTCAGTGTCGGATTTGTCTCGAAACAGATGGCAGAGATTTCATAGCTCCTTGTAAGTGCAAAGGTACAGCAAAGTATGTACATCGAGAATGTTTGGATCATTGGCGAGCTGTTAAGGAAGGGTTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCTTATTATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGCGTACCTTGAAATTTCGATTCTTTGTCACCAGAGACATTTTGTTTATTTTTCTTTCTGTCCAGCTTGTCATTGCTTCGCTGGCTTATTTGGTTTATCTAATAGATGGTTACCAGCTGTATTGGCTTCGTCATCTATGGGGTTTTGATAGTGAACTGTGCTTTTACTATATTTGTGGAGCGCTTTTGTTTTTTGCCCTGCTTGGTCTTTCTGGGTGCTTCATTACTTGTTATGATCGACGAGTTCGCAATGATTTGGCTCAGCCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCAGACTGTCACTTGCCAGGCACACTTTGTATGTGGACAGACTGCACCACATGCTTTGAGAGTTGTGGAACAATGGCAACTGAATGCGGTGGATGTTTGGGAGGTGCCGGGGAAGCAGGACTACCATTATTATTCATAATGGCTTTGATTGTTCTGGGACTTTTCACTGTGATTGGGATATTTTACAGTGTATTGGTGGCTACCATGGTAGGACAGCGGATATGGCAACGACATTATCACATACTTGCAAAAAGGATGTTAACAAAGGAGTACGTGGTCGAAGACGTTGATGGAGAACAGACAGGGTCTGATTGGTCTCCCCCCTCTCTCCCACAGGAACATATTCAGCAGCTGAAGACACTGGGCCTCCTTTGA 972 0.4486 MADHSDSSPLVPPIPLSDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTAKYVHRECLDHWRAVKEGFAFAHCTTCKAPYYLRVHVAADRKWRTLKFRFFVTRDILFIFLSVQLVIASLAYLVYLIDGYQLYWLRHLWGFDSELCFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEQTGSDWSPPSLPQEHIQQLKTLGLL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242093g00006 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 95 IPR013083 -
Stsc242093g00006 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Stsc242093g00006 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 322 - -
Stsc242093g00006 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Stsc242093g00006 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Stsc242093g00006 323 SMART ringv_2 33 82 IPR011016 GO:0008270
Stsc242093g00006 323 SUPERFAMILY RING/U-box 29 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242093g00006 Stsc-Chr242093 33005 37160 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242093g00006 1 323 C3H Transcription Factor Family AT2G22120 85.185 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242093g00006 - - gmx:100791777 646.351