Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242091g00005 ATGGATTTGGCATCTAGTTGCAAGGAAAAGTTGGCATATTTTCGAATAAAAGAGCTCAAAGATGTTCTCACGCAGTTGGGCCTTTCCAAGCAGGGAAAAAAGCAGGATCTTGTTGATCGGATATTATCTATGCTCTCAGATGATCAAGTATCCAAGATGTTTGCCAAGAAGAATGCTATTGGAAAAGAACAGGTGGCAAAATTAGTGGACGACACATATAGAAAAATGCAGATATCTGGTGCCACTGACCTTTCATCAAAGGGACAGGGTGCTTCAGATAGCAGTAATGTGAAAATTAAAGGTGAAAAAGATGATTCCTTTCAATCAGATACAAAGATTCGCTGTATCTGCGGAAGTACATTGGACACAGATCCATTGGTCAAGTGTGATGATCCACGATGCCATGTGTGGCAGCACATCAATTGTGTTATTATTCCTGAAAAACCTATGGATGGTGCCCCGCCAGTACCTGATAAATTTTATTGTGAAATCTGTAGACTCAGCCGTGCAGACCCGTTTTGGGTTTCAATGGGACACCCCTTGTCTCCGGTGAAGTTGAGCATAACCAGTAATCCAACTGATGGATCCAACCCAGTGCAGAGTGTGGAAAGAACGTTTCAACTGACAAGAGCAGACAAGGACTTGGTATCAAAACCAGAATTTGATGTTCAGGCTTGGTGTATGCTTCTGAACGACAAGGTGTCATTTAGGATGCAATGGCCACAGTATACAGACCTACAGGTCAATGGTGTTCCTGTTCGTGCAATTAACAGACCTGGTTCACAATTGCTTGGGGCTAATGGCCGTGATGATGGTCCAATTATCACGCCATATACAAAAGACGGAATTAATAAGATTTCCTTAACAGGATGTGATGCTCGTCCTTTTTGCTTAGGGGTCCGTATTGTTAAAAGGCGCAGCATGCAACAGATCCTAAACATAATTCCGAAGGAATCTGAAGGGGAACAATTTGATGATGCTCTTGCACGAGTTCGTCGTTGTGTTGGAGGTGGAAATGAAGATGATAATGCTGACAGTGACAGTGATTTGGAAGTGGTTTCAGACACTTTTAGCATCAGCCTTCGTTGTCCAATGAGTGGATCAAGGATGAAGATTGCAGGCAGATTCAAGCCATGTATTCACATGGGATGCTTTGATCTTGAAGTTTTCGTGGAAATGAACCAACGTTCAAGGAAGTGGCAATGCCCAATATGTCTCAAAAACTATGCATTGGAGAATATCATTATTGATCCCTATTTCAATCGTGTCACTTCTCTGATGACAAACTGTGGTGAAGAGGTTACTGATATTGAGGTGAAGCCTGATGGTTCTTGGCGTGTTAAGGCAAAGAGTGAAAGTGAGCGCCTGGAGTTGGGGAATCTTGCACAATGGCACTTCCCTGATGGGTCCCTCTGTGTTTCGGCTGATGGAGAAGGCAGAAGAGTGGAAGCTTTGAAAGTGGTGAAACAGGAGGGTGTTTCAGACAGTCCTATTGGCCTAAAGCTAGGAATTAGGAAGAATCGGAATGGACTTTGGGAAGTCAGCAAACCTGAGGACACAAACACCTCTTCTGGTAATAGATTGAAAGATATTTTTGGAAATCATGAACAAGTGGTTATTCCAATGAGCAGTAGTGGCTCTGAAAGTCTTCGAGATGGTGATGATCCCAGTGTAAATCAGGGTGGGGGTGGTGGTGGTGGTGGGCATATTGATTATTCTACCACCAATGGAATTGAGATGGATTCTCCATATCTTAACAATGTTAATTTATTATATGATTATACTGCAAATAACACCTCTGCACAGGCAGGTGGTGCAGAGGTTATTGTTCTTAGTGATTCTGAAGAAGATAATGATTTATTGGTATCTCCTGCAACTGCGTATAAGAACAACCAGACTGATCCTACAGGAGATGGTTACTCGGTGCCACCACCTGGAATTGTTGATTCATATAATGAAGAGCACACTAGTCTTGGTGGTAATTCATGCTTAGGACTTTTCCCTAATGATGATGATTTTGGCTTGTGGTCATTACCGTCGGGATCTCAGGCTGGTCCAGGCTTCCAGTTATTTAGTCATGATGCAGATGCTTCAGATGCATTGGTGCATTTGCAGCATGGTCCTATTAATTGCTCATCTTCATTGAATGGTTATGCATTGGCTCCGGATGTTGGTTTGGGGTCTGGTAGTCTTATGCCAGATTCCTCTGCTGGTCGATCGGATGCTGATTTAAATGTTGGATTGGTTGACAATCCATTGGCATTTGGGGGAGATGATCCCTCACTTCAAATTTTTCTCCCCACAAGACCTGCCGAACCATCAGTACAACATGAACTGAGAGATCAGCCAAATGTGTCTAATGGGGTCCTAAATGAGGATTGGATATCTCTTAGTCTTGGTGGTGGTACTGCTGGTACAAATGGTGATGCTTCCACTCAAAATGGGTTGAGTTCTGGACTTCAAATCCCACCAAGAGACCTAGCTAGAGAAAGTGCCCCAAATACCAATATGGATGATGCTGCATCTTTGCTTCTCGGTATGAATGATACTAGATCTGACAGGTCAAGTAGACAAAGATCAGATAGCCCATTTTCATTTCCTCGCCAAAAGCGTTCTGTAAGGCCACGCTTGTACCTTCCTATCGACTCTGATTCTGAATAA 2661 0.431 MDLASSCKEKLAYFRIKELKDVLTQLGLSKQGKKQDLVDRILSMLSDDQVSKMFAKKNAIGKEQVAKLVDDTYRKMQISGATDLSSKGQGASDSSNVKIKGEKDDSFQSDTKIRCICGSTLDTDPLVKCDDPRCHVWQHINCVIIPEKPMDGAPPVPDKFYCEICRLSRADPFWVSMGHPLSPVKLSITSNPTDGSNPVQSVERTFQLTRADKDLVSKPEFDVQAWCMLLNDKVSFRMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARPFCLGVRIVKRRSMQQILNIIPKESEGEQFDDALARVRRCVGGGNEDDNADSDSDLEVVSDTFSISLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRVTSLMTNCGEEVTDIEVKPDGSWRVKAKSESERLELGNLAQWHFPDGSLCVSADGEGRRVEALKVVKQEGVSDSPIGLKLGIRKNRNGLWEVSKPEDTNTSSGNRLKDIFGNHEQVVIPMSSSGSESLRDGDDPSVNQGGGGGGGGHIDYSTTNGIEMDSPYLNNVNLLYDYTANNTSAQAGGAEVIVLSDSEEDNDLLVSPATAYKNNQTDPTGDGYSVPPPGIVDSYNEEHTSLGGNSCLGLFPNDDDFGLWSLPSGSQAGPGFQLFSHDADASDALVHLQHGPINCSSSLNGYALAPDVGLGSGSLMPDSSAGRSDADLNVGLVDNPLAFGGDDPSLQIFLPTRPAEPSVQHELRDQPNVSNGVLNEDWISLSLGGGTAGTNGDASTQNGLSSGLQIPPRDLARESAPNTNMDDAASLLLGMNDTRSDRSSRQRSDSPFSFPRQKRSVRPRLYLPIDSDSE 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242091g00005 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 173 IPR013083 -
Stsc242091g00005 886 MobiDBLite consensus disorder prediction 801 886 - -
Stsc242091g00005 886 FunFam E3 SUMO-protein ligase SIZ1 1 66 - -
Stsc242091g00005 886 SUPERFAMILY SAP domain 1 64 IPR036361 -
Stsc242091g00005 886 MobiDBLite consensus disorder prediction 542 574 - -
Stsc242091g00005 886 MobiDBLite consensus disorder prediction 801 820 - -
Stsc242091g00005 886 MobiDBLite consensus disorder prediction 83 103 - -
Stsc242091g00005 886 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Stsc242091g00005 886 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Stsc242091g00005 886 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Stsc242091g00005 886 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Stsc242091g00005 886 FunFam E3 SUMO-protein ligase SIZ2 333 447 - -
Stsc242091g00005 886 CDD SP-RING_Siz-like 360 409 IPR031141 -
Stsc242091g00005 886 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Stsc242091g00005 886 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 667 - -
Stsc242091g00005 886 Pfam SAP domain 14 42 IPR003034 -
Stsc242091g00005 886 SMART sap_9 11 45 IPR003034 -
Stsc242091g00005 886 Gene3D SAP domain 1 64 IPR036361 -
Stsc242091g00005 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 447 IPR013083 -
Stsc242091g00005 886 SUPERFAMILY FYVE/PHD zinc finger 105 169 IPR011011 -
Stsc242091g00005 886 SMART PHD_3 114 166 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242091g00005 Stsc-Chr242091 28142 36965 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc242091g00005 zf-MIZ 4.2e-19 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242091g00005 - - gmx:100793735 1462.2