Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242091g00002 ATGGACATTGATCTGAACCATGCAGTAGTGAGTGAGGATGATGATGACAATGTTGAATGTGACAAAGGTGCTTCTTCTTCTTCTTCAGATTCTTCTGTTGTGTCTTCTTACCTTGAACTTTGGCATGCTTGTGCTGGAACTCTCACATCACTACCAAAGAAAGGGAATGTGGTTGTTTACTTCCCACAAGGGCACTTAGAACAAGCCTCTTCTTTATTCTCTCCTTTCACACCAATGGATCATCATGTGCCTAACTATGATCTTAAGCCTCAAATCTTCTGCAGGGTTGTTAATGTTCAGTTACTTGCCAATAAGGAGAATGATGAGGTTTATACTCAGCTTACTTTGCTTCCACAAGATGATGATCAGTTGGAAGATAAGAATTTGGAGGGTAATAAAGAGGTTGATGAAATTGGAGTTCCTCCTATAAAATCAACACCTCACATGTTCTGCAAAACACTAACTGCTTCAGATACCAGCACCCATGGAGGGTTCTCTGTTCCTAGAAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAAAGACCCTCTCAAGAGCTTGTGGCAAAAGACCTGCATGGTGTGGAGTGGAGATTTCGCCATATTTACAGGGGGCAGCCAAGGAGGCATTTACTCACAACTGGTTGGAGTATGTTTGTTGGTCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTGTTTCTAAGGGGTGAAAATGGAGAACTGAGATTGGGAATCAGAAGAGCTGTTAGACCAAGAAATGGTCTTCCTGGAACAGTCATTGGAAACCAGAACTGTTATCCCAGTTTCCTTTCTTCTGTTTCTGATGCCATCTCCACCAAAACCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCACCCTTTGTTGTTCCATATAAAAAATATGTTAAAAGCATCAACAATCCTGTGACCATTGGGACAAGATTCAAAATGATGTTTGAAATGGATGAATCTCCAGAAAGAAGGTGTGGTGGTGGTACTGTGATTGGAATGAGTGAAGTTGATCCATATAGATGGCCTAAATCAAAGTGGAGATGCTTGATGGTTAGATGGGATGAGGATATTGATACTAATCATCAAGACCGAGTATCTCCATGGGAGATTGATCCTTTCGCTTCGCTCCCTCCTTTGAGTCTTCAGTCTTCCCCAAGACTGAAGAAATTAAGGGAAGATGGGAAAGTTGCCTCTCACAGTCACCTCATCACTGGAAGCAGTGGATTGGTGGACTTTGAGGAGTCTGTAAGATCACCAAAGGTCTTGCAAGGTCAAGAAAATGCTGGTTTTCTGTCACTCTATTATGGATGTGACACGTTAACTAACCGGCAGCGATTCGAGATGAGCCCTCATACTGGAGTGAGAAGGGCCAACACTGCTGAGCTTATGAGTGTTCATCCATTCAGCTATGCAGGCTTCACAGAAACTACTAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATAGGTCCATTGAAATCCCTTAGGGGAAAAGTTGATTTGAGCCTTTGTTCTTGGGGCAAAGCCAACAATGGTGTTGGTTGCACCACTTTCAACTTGCATCAAGCAACCAAACCACAAGTTCTTGAATCTTCTTATTCTCCCTGTGAGGGTGTTCACAAAACAACTGGTCTAACCAACATGTTTTACTCGAAACCGAGCAATTTCCACAGAGAGAATGTCTCCTTCAACACACATTCCAATCAAGCAGTGATCAAGAGAAGTGAAAATGGAAGAACAGATGTTCCAAATGAGCATAAGAAGACGATGCTAGGCGAAACTTGTGCAGCGGATATGAAGATTCCAAATGACAGCAAAAATGTTAAGGCAAAGGTTCACAAGCAAGGAAGCTTAGTAGGAAGAGCCATTGATCTATCAAGATTGAGCAGCTATGCTGACCTGCTGAGTGAACTAGAGAGACTTTTCAGCATGGAAGGCCTTCTTAGAGATCCTGATAAGGGATGGAGGATCCTCTACACTGATACTGAGAATGATATAATGATTGTTGGGGATGATCCATGGCATGAGTTCTGCAATGTGGTGTGCAAGATCCATATATATTCCCAAGAAGAAGTGGAAAAGATGACAATTGGGATAATCAGTGATGAAACCAATAGCAGTTTGGAAGAGGCACCAATGATTATGGAGCCTTCAAAGTCCTCCTCAGTGGGTCAACCAGATTATTATTCTCCAACAGTCCTCAAAGTTTAA 2235 0.4237 MDIDLNHAVVSEDDDDNVECDKGASSSSSDSSVVSSYLELWHACAGTLTSLPKKGNVVVYFPQGHLEQASSLFSPFTPMDHHVPNYDLKPQIFCRVVNVQLLANKENDEVYTQLTLLPQDDDQLEDKNLEGNKEVDEIGVPPIKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSMFVGQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPGTVIGNQNCYPSFLSSVSDAISTKTMFHVFYSPRASHAPFVVPYKKYVKSINNPVTIGTRFKMMFEMDESPERRCGGGTVIGMSEVDPYRWPKSKWRCLMVRWDEDIDTNHQDRVSPWEIDPFASLPPLSLQSSPRLKKLREDGKVASHSHLITGSSGLVDFEESVRSPKVLQGQENAGFLSLYYGCDTLTNRQRFEMSPHTGVRRANTAELMSVHPFSYAGFTETTRFPRVLQGQEIGPLKSLRGKVDLSLCSWGKANNGVGCTTFNLHQATKPQVLESSYSPCEGVHKTTGLTNMFYSKPSNFHRENVSFNTHSNQAVIKRSENGRTDVPNEHKKTMLGETCAADMKIPNDSKNVKAKVHKQGSLVGRAIDLSRLSSYADLLSELERLFSMEGLLRDPDKGWRILYTDTENDIMIVGDDPWHEFCNVVCKIHIYSQEEVEKMTIGIISDETNSSLEEAPMIMEPSKSSSVGQPDYYSPTVLKV 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242091g00002 744 Pfam Auxin response factor 277 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc242091g00002 744 SUPERFAMILY DNA-binding pseudobarrel domain 142 262 IPR015300 -
Stsc242091g00002 744 SUPERFAMILY CAD & PB1 domains 612 694 - -
Stsc242091g00002 744 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677
Stsc242091g00002 744 FunFam Auxin response factor 611 704 - -
Stsc242091g00002 744 SMART B3_2 150 252 IPR003340 GO:0003677
Stsc242091g00002 744 FunFam Auxin response factor 313 386 - -
Stsc242091g00002 744 Pfam AUX/IAA family 606 699 IPR033389 -
Stsc242091g00002 744 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 704 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc242091g00002 744 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Stsc242091g00002 744 Gene3D - 148 252 IPR015300 -
Stsc242091g00002 744 ProSiteProfiles PB1 domain profile. 615 697 IPR000270 GO:0005515
Stsc242091g00002 744 CDD B3_DNA 148 250 IPR003340 GO:0003677
Stsc242091g00002 744 Gene3D - 314 386 - -
Stsc242091g00002 744 FunFam Auxin response factor 148 252 - -
Stsc242091g00002 744 Gene3D - 612 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242091g00002 Stsc-Chr242091 14370 18296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242091g00002 21 727 B3 DNA Binding Superfamily AT5G60450 54.267 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc242091g00002 AUX_IAA 1.7e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242091g00002 - - gmx:100783513 1026.16