Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242090g00001 ATGGCCAAAGAGAATCAGCATATAATCTTTGATGATGATGATGATGAGAAAAAGAATATGAAAAAGATTATTCGTAGGGAAGTTGAAAGACGAAGGAGGACAGAAATGTCTACTCTCTGTGCATCACTCCGCTCTTCACTCCCTTTTTACCTCATCAAGGGGAAGCGTTCGGTATGTGATCACATAGGTGAGGCTGCAAATTATGTCCAATTTTTGAAGCAGAAAATTGAAGCACTTGAGTTCAAGAGAGATAGACTACTCAAACAGAAACAGAAACAGACAGTTGATGATGATGATGAGATGAATATTATTCCAGAATCATCAGATCATAGAAGAATAAGTGATAATAGTGTCAGTATCAACCTTGTTCCAGGTGGCTTGGAAATTGATATTTGTGTTACTAATGGTTGTTTATCAGACTTAATTTCAATACTGCTTCAACAAGGCTGTCATGTTGTTAGCTGCGTTTCCTCTCAAGTCAATGGCACAACGTTTCATTCTCTTCTCTCTCAAGTGGAGGACTCGACAACGGTTGATGTTACTAGGCTGAAAAAGAAACTGGCTCTCGCAATCTTGCTTCATGCTAATTATTCCAATTGA 600 0.3833 MAKENQHIIFDDDDDEKKNMKKIIRREVERRRRTEMSTLCASLRSSLPFYLIKGKRSVCDHIGEAANYVQFLKQKIEALEFKRDRLLKQKQKQTVDDDDEMNIIPESSDHRRISDNSVSINLVPGGLEIDICVTNGCLSDLISILLQQGCHVVSCVSSQVNGTTFHSLLSQVEDSTTVDVTRLKKKLALAILLHANYSN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242090g00001 199 Coils Coil 69 89 - -
Stsc242090g00001 199 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 20 72 IPR011598 GO:0046983
Stsc242090g00001 199 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 19 185 - -
Stsc242090g00001 199 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 90 IPR036638 GO:0046983
Stsc242090g00001 199 Pfam Helix-loop-helix DNA-binding domain 25 72 IPR011598 GO:0046983
Stsc242090g00001 199 Gene3D - 11 99 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242090g00001 Stsc-Chr242090 3328 5068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242090g00001 14 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G12540 34.444 1.25e-23 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc242090g00001 HLH 0.00025 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242090g00001 - - ccaj:109790384 171.785