Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242086g00007 ATGGCAACAAATAGATTCATATGTGAGATATGCAACAAAGGGTTTCAGAGGGACCAAAACCTACAGTTACATAGAAGAGGACATAATCTACCATGGAAGCTAAGGCAAAGAGCAACAACTGAAGAGGTGATGAAGAAGAGGGTGTATGTGTGCCCTGAAAAAACATGTGTGCACCATAATCCTGCCCGGGCACTTGGAGACTTGACTGGGATAAAGAAACATTATAGTAGAAAACATGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCAAAGAAATATGCAGTTCAATCTGATTGGAAGGCTCATCAGAAAACATGTGGCACAAGGGAATATAAATGTGATTGTGGAACTATATTCTCCAGGAGGGACAGCTTCATCACACACAGGGCCTTCTGTGATGCATTAACTGAGGAAAACAACAGAGTAAATCAACAAGGATTAACAAATGGGATGCCACAAAACTTGCAAAATGAACAAGTCCCTGATCTTATAGCCACTAATGCATCTGAACTCAACAGCAGCAGCAACAACAACCACCCACTTAGAACACTCTCACAAGAGATTGTACCTGTGCCATTCAAGTCCATGAGCATTGGTGGGGGCATGTTCTCCCCAACAAGTTCATCATCAGGTACACTTTTTGGTGGTCCAAAGAGCATGCACCCTCTTCCTCCTTCTTCTTCAAGCCTTCAACTCAGCTCCAACAACTCCACTGGTTTCAATTACTTCCAAGATAGCAGCAAGAATTTGGGTCTTGTTTCCAGCTCAGCTCACATGTCTGCAACAGCTTTATTGCAGAAAGCAGCTCAAATGGGTGCTGCTGCAAGCAGCAATAACAGCATTAACTCCCCCATGATGCAAAAGCCTTTTGTTACTACCATGGCTGGTCCTGACCAAGTTTCTGGTGCTGCTAATTCAATGCAGCACCATAACCATAACAATAACAATCCTTCCTATGATCACTTCAATCCACAGGCTGATCAGTTTTTTCATAAAAGGCAGCAAGAAATGCCACTGATATTTGAAGCTAATAACAATAGTAATGATGGGTCAACAATGCATAATGGTATGGGAATGCTTAGCACAATGTTCATGGGAAGTGACCACAATACACAAGAGGTTGGTGCTACTGGTTTGGTCCATGAAAGAGATCTTGCAGAAGGAAATAACCAAATGGGGCCACCAAGGTTTGGTGTTAGTAATGACATGACAACAGTTCATGATTTCTTGGGAGTTGGGGGGTCAAATTCAAGAGCTACAGGGAGTTTGCATGAATTTCAGACACATCATCAACAACAACAACAAAGATTGGAGTTAGAAGCATTAAGCCAACAGAGGTTACCACATATTAATCACTTTCAGCATCACATTCCACAAGATTCAACTATGGAGAAATCTGTTTGGGACATCTGA 1413 0.4197 MATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRATTEEVMKKRVYVCPEKTCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQQGLTNGMPQNLQNEQVPDLIATNASELNSSSNNNHPLRTLSQEIVPVPFKSMSIGGGMFSPTSSSSGTLFGGPKSMHPLPPSSSSLQLSSNNSTGFNYFQDSSKNLGLVSSSAHMSATALLQKAAQMGAAASSNNSINSPMMQKPFVTTMAGPDQVSGAANSMQHHNHNNNNPSYDHFNPQADQFFHKRQQEMPLIFEANNNSNDGSTMHNGMGMLSTMFMGSDHNTQEVGATGLVHERDLAEGNNQMGPPRFGVSNDMTTVHDFLGVGGSNSRATGSLHEFQTHHQQQQQRLELEALSQQRLPHINHFQHHIPQDSTMEKSVWDI 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242086g00007 470 MobiDBLite consensus disorder prediction 301 320 - -
Stsc242086g00007 470 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Stsc242086g00007 470 SMART c2h2final6 84 104 IPR013087 -
Stsc242086g00007 470 SMART c2h2final6 49 79 IPR013087 -
Stsc242086g00007 470 SMART c2h2final6 6 28 IPR013087 -
Stsc242086g00007 470 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Stsc242086g00007 470 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 430 IPR031140 -
Stsc242086g00007 470 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Stsc242086g00007 470 FunFam Zinc finger protein MAGPIE 2 29 - -
Stsc242086g00007 470 SUPERFAMILY beta-beta-alpha zinc fingers 5 105 IPR036236 -
Stsc242086g00007 470 Gene3D Classic Zinc Finger 62 142 - -
Stsc242086g00007 470 MobiDBLite consensus disorder prediction 207 232 - -
Stsc242086g00007 470 FunFam protein indeterminate-domain 5, chloroplastic-like 62 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242086g00007 Stsc-Chr242086 21265 23907 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242086g00007 1 276 IDZ Gene Family AT3G50700 52.787 1.46e-95 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc242086g00007 zf-C2H2_jaz 6.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242086g00007 - - ahf:112730641 805.053