Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242084g00004 ATGAACCTCTTCCTCTGCCTCGCCATTGTAATCTACCTTCTTCTTCTGTCTAGCACTTCCTCTGAAGCTGTTCACCATCACTATGTGAATGCAACTCACCTCAATTTGTTGGAGGCACATGAAGCTGAAGCGTCCTTAGCTGGGAGGGGTGGGTACTCTCTTATGGTAGGACTCACCCTTATTCAAAGTGCTGCTGCCAAAGGAGCAGTTTGTTTGGATGGATCATTGCCTGGTTACCATTTGCATCGAGGATATGGATCAGGAGCAAATAGCTGGATCATTAATCTAGAGGGAGGAGGATGGTGTAATGATGTCAGGTCATGCCTTTATCGCAAGAAAACTCGGCGCGGATCTTCGGCCTTCATGGAAAGGGAGATACCTTTTACAGGAATATTAAGCAATAAGGCTCAACAAAATCCAGACTTTTTCAACTGGAACAGAGTGAAGATTCGTTATTGTGATGGTGCCTCTTTTGCTGGGGACAGTGAACATAAGGCTGCACGTTTGCAATTCCGAGGACAACGCATTTGGATGGCTGCAATGGAGGATTTGATGTCAAAGGGAATGCGTTTTGCCCGGCAGGCTCTACTTTCTGGCTGCTCGGCTGGTGGTCTCGCTACCATCATACACTGCGATGAATTTCGAGGTCTGTTTCCAAGGAATACCAAAGTGAAGTGTCTCAGTGATGCTGGGCTGTTTCTTGATGCGAAAGACATATCTGGTGGACATACACTCAGGAATTTTTTCAGTGGTATCGTAGGGTTGCAGGGAGTACAGAGGAATCTGCCGCGAACTTGTACCAATCACCTTGATCCCACTTCGTGCTTCTTCCCTCAGAACTTGATTGCCGGTATAAGAACCCCACTCTTCATTCTCAACACTGCCTATGATTCATGGCAGATCCAGTCAAGCTTAGCTCCCACGACAGCTGACCCGAGTGGCAATTGGCATGATTGTAGAAAAAACTATTATAGGTGTTCTGGTTCACAGATCCAGTTTCTGCAAGCTTTCAGGAATGAAATGTTGAATTCTATGAAAGGCTTCTCAAGATCAAATCAGAATGGAATGTTTATCAATTCTTGTTTTGCTCACTGCCAATCTGAGAGGCAGGATACATGGTTTGCCGACAATTCTCCTGTCATTAGGGAAAAGGCAATTGCTCTGGCAGTTGGAGACTGGTATTTCGACCGTGCAGTCGTTAAGGACATTGATTGTGCTTACCCTTGTGATAATACATGCCACAATCTGATCTTCAGATGA 1260 0.4556 MNLFLCLAIVIYLLLLSSTSSEAVHHHYVNATHLNLLEAHEAEASLAGRGGYSLMVGLTLIQSAAAKGAVCLDGSLPGYHLHRGYGSGANSWIINLEGGGWCNDVRSCLYRKKTRRGSSAFMEREIPFTGILSNKAQQNPDFFNWNRVKIRYCDGASFAGDSEHKAARLQFRGQRIWMAAMEDLMSKGMRFARQALLSGCSAGGLATIIHCDEFRGLFPRNTKVKCLSDAGLFLDAKDISGGHTLRNFFSGIVGLQGVQRNLPRTCTNHLDPTSCFFPQNLIAGIRTPLFILNTAYDSWQIQSSLAPTTADPSGNWHDCRKNYYRCSGSQIQFLQAFRNEMLNSMKGFSRSNQNGMFINSCFAHCQSERQDTWFADNSPVIREKAIALAVGDWYFDRAVVKDIDCAYPCDNTCHNLIFR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242084g00004 419 PANTHER NOTUM-RELATED 33 415 IPR004963 GO:0016787
Stsc242084g00004 419 Pfam Pectinacetylesterase 54 398 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242084g00004 Stsc-Chr242084 26793 31847 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242084g00004 55 419 Carbohydrate Esterase AT1G57590 73.151 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242084g00004 K19882 - gmx:100793403 687.182