Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242083g00002 ATGGGGAGGGGAAGAGTTGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTGACATTTGCAAAGAGGAGGAATGGTCTTCTCAAGAAAGCTTATGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACAGAGGAAAACTCTATGAGTTCTGTAGCAGCTCTAGCATGCTAAAAACACTTGAGAGGTATCAGAAGTGCAGTTATGGTGCTGTGGAAGTTAGCAAGCCTGCTAAAGAGCTTGAGCAGAACAGCTACCGTGAATACTTAAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACTCAGAGAAATCTTCTAGGGGAAGATTTGGGACCATTGGGTACCAAAGATCTTGAGCAACTTGAAAGGCAATTGGATTCTTCTCTGAAGCAAGTGAGATCCACAAAGACACAATTTATGCTGGACCAGTTAACTGATCTTCAAAATAAGGAGCAGATGTTGGTAGATGTCAACAGAACCTTGAGCATGAAGCTGGAAGAAATCAATTCAAGGAATCAATTTAGGCAGCCATCATCATGGGAAGCTGGTGATCAAAGTATGCAATATGGAGCTCCACACAATGCTCACTCCTCTCAGGGCTTCTTCCAGCCTCTGGACTGCAACCCCACTTTGCAGATTGGCAATGACTATAGGTACAATGGGGTAGGCTCAGATCAGATAAGTGCCACAACAAGTCAAGCTCAACAAGTGAGTGGTTTCATCCCTGGATGGATGCTTTGA 762 0.4357 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELEQNSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKDLEQLERQLDSSLKQVRSTKTQFMLDQLTDLQNKEQMLVDVNRTLSMKLEEINSRNQFRQPSSWEAGDQSMQYGAPHNAHSSQGFFQPLDCNPTLQIGNDYRYNGVGSDQISATTSQAQQVSGFIPGWML 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242083g00002 253 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc242083g00002 253 Coils Coil 125 145 - -
Stsc242083g00002 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc242083g00002 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc242083g00002 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
Stsc242083g00002 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc242083g00002 253 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Stsc242083g00002 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc242083g00002 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc242083g00002 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc242083g00002 253 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc242083g00002 253 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc242083g00002 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc242083g00002 253 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Stsc242083g00002 253 FunFam MADS-box transcription factor 1 13 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242083g00002 Stsc-Chr242083 14893 18751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242083g00002 1 253 MADS-box Gene Family AT5G15800 69.202 3.05e-119 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc242083g00002 K-box 3.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242083g00002 K09264 - gmx:100786066 437.958