Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242083g00001 ATGGGAAGGGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAAACAAGCCAGCAAGTGACGTTTTCAAAGAGGAGAACTGGGCTTCTCAAGAAAGCACACGAAATCTCAGTGCTTTGTGATGCTCAAGTAGCATTGATTATGTTCTCTACCAAAGGAAAACTCTTTGAGTATTCATCTGAATCCAG 185 0.4378 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSSES 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242083g00001 61 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc242083g00001 61 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Stsc242083g00001 61 Gene3D - 13 61 IPR036879 GO:0003677|GO:0046983
Stsc242083g00001 61 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc242083g00001 61 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 60 - -
Stsc242083g00001 61 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Stsc242083g00001 61 FunFam MADS-box transcription factor MADS-MC 13 61 - -
Stsc242083g00001 61 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc242083g00001 61 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc242083g00001 61 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc242083g00001 61 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242083g00001 Stsc-Chr242083 2911 3095 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242083g00001 1 61 MADS-box Gene Family AT1G26310 85.246 3.83e-32 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc242083g00001 SRF-TF 4.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242083g00001 K09264 - gmx:100786580 114.39