Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242082g00007 ATGAACAACAATTCAGTTTCAGAGAACAGTTTCTACATTGACAGTGATGAAGAAGATGAGGAGAATAAGGATTTGAACAAAGCAGAAGGAGGAGGTGGTGATGATGGTGATGGTAATGATTCAGATTCTTCAGGTTACTCAAATAATGAGAACCCTCCACAGAGAAAACCAAGCTCCTACAACATTTCATGGCCTCAGAGTTACAGGCAGTCAATTGATCTATACAGTAGTGTTCCATCACCAAACATTGGATTTCTAGGGACACCTTCATTGTCAAGACTAAGCAGTTCTTTTCTCTCAACATCACTAACAAGGAGGCACACTCCTGAGTCACTTCCATCAGTTACAAAGCCCTTGATACAGCCGGTAGCGGTCGAGGATGAAGTCGTGCATCATCGGCGTAGCTCTCATGCCTTGATTCCTCCAAGAAGGTCTTCTTCTTCCCTTAAGAAGGAATCAAAGGCCTCTCATGAAATTCCAATTTCAAGACACTGTTCTTTTGGACAAGCTGTGCTTAATGGCATAAATGTCCTCTGTGGTGTAGGGATCCTTTCTACACCTTATGCTGCCAAAGAAGGTGGATGGATTGGCCTTTTAATCTTGTTCCTTTTCGCAATTATTTCCTTTTATACCGGGATGCTGCTGCGTTCATGCTTGGATAGTGAGCCTGGAATTGAGACATATCCTGACATTGGCCAAGCCGCTTTTGGAACTACCGGACGAATCTTCATTTCAATAGTACTGTATGTGGAGTTATATGCATGTTGCATTGAGTATATAATTCTGGAGGGTGACAATTTGTCTTCCTTATTTCCAAGTGCTCACTTAAGTTTGGGAGGAATCGAATTGGATTCGCATACTTTGTTTGCGCTGATTACCACCCTGGCTGTTCTGCCTACTGTTATGCTCCGGGACCTAAGCATTCTCAGTTACATCTCAGCTGGTGGAGTTATCGCGTCGGTTTTGGTGGTTATCTGCTTGTTTTGGGTCGGCATTGAGGATGTCGGATTTCAAAGCAAAGGGACTACACTCAATCTTGCAACTTTTCCAGTTGCTGTTGGTCTCTATGGATACTGCTACTCAGGACATGCAGTGTTTCCAAACATTTATACATCAATGGCAAATCCAAATCAATTCCCTGCAGTGCTCTTAACATGTTTTGGTATCTGTACCGCGCTGTATGCCGGAGCAGCTGTTATGGGATACACAATGTTTGGAGAAGCTATTCTGTCTCAGTTCACTCTTAACCTTCCCAAAGAATTAGTTGCTACCAAGATTGCTGTCTGGACTACGGTGGTTAATCCATTTACCAAGTATGCATTGACTATATCTCCAGTTGCAATGAGTCTAGAAGAGTTGATACCATCAACCCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAACAGGACTAGTAGTTTCAACCCTCTTCATTGGCCTTTCTGTTCCCTTTTTCGGTCTTGTTATGTCATTGATTGGATCTTCACTCACAATGCTTGTTACTTTGATACTTCCATGTGCTTGTTTCCTGCGAATCTTGCAAGGCAAAGTCTCGCGAATGCAGGCTGTACTTTGCATTATAATCATCTCAGTAGGTGTTGTTTGTGCTGTTTTCGGGACATACTCTGCGCTGGCCGAAATCGTTAGGAGTTTGAGTGGATGA 1665 0.4288 MNNNSVSENSFYIDSDEEDEENKDLNKAEGGGGDDGDGNDSDSSGYSNNENPPQRKPSSYNISWPQSYRQSIDLYSSVPSPNIGFLGTPSLSRLSSSFLSTSLTRRHTPESLPSVTKPLIQPVAVEDEVVHHRRSSHALIPPRRSSSSLKKESKASHEIPISRHCSFGQAVLNGINVLCGVGILSTPYAAKEGGWIGLLILFLFAIISFYTGMLLRSCLDSEPGIETYPDIGQAAFGTTGRIFISIVLYVELYACCIEYIILEGDNLSSLFPSAHLSLGGIELDSHTLFALITTLAVLPTVMLRDLSILSYISAGGVIASVLVVICLFWVGIEDVGFQSKGTTLNLATFPVAVGLYGYCYSGHAVFPNIYTSMANPNQFPAVLLTCFGICTALYAGAAVMGYTMFGEAILSQFTLNLPKELVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSTHAKSYLYSIFIRTGLVVSTLFIGLSVPFFGLVMSLIGSSLTMLVTLILPCACFLRILQGKVSRMQAVLCIIIISVGVVCAVFGTYSALAEIVRSLSG 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242082g00007 554 FunFam Amino acid transporter AVT1A 163 551 - -
Stsc242082g00007 554 Pfam Transmembrane amino acid transporter protein 165 543 IPR013057 -
Stsc242082g00007 554 PANTHER OS05G0424000 PROTEIN-RELATED 172 538 - -
Stsc242082g00007 554 MobiDBLite consensus disorder prediction 40 62 - -
Stsc242082g00007 554 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242082g00007 Stsc-Chr242082 33391 38245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242082g00007 3 487 Amino Acid or Auxin Permease AAAP Family AT2G39130 70.816 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242082g00007 K15015 - gmx:100810530 863.603