Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242082g00003 ATGGAAGCTAGAACTAAAAATTTGCCACCAAAGGGAAAAAAACCATTGCATACACATAGCCAAATATTTAACTATGCATATACTGAGCTTGAAAAGGAGAAGGCTCAGCAACACGAAAACAAGAACCTTACCTTCTCAGGAGTGATTAAAATGGCTACCAACACTGAAAAAAGAAAGAGGCCTTTAATTGAGATTTCTTTCAAAGACTTGACTCTTACATTGAAATCTCGAAACAAGCCTATACTGAGATGTGTTACTGGGAAAATTAAACCCGGCCGAATCACAGCTGTCATGGGATCATCAGGGGCTGGCAAGACAACATTTTTGTCAGCTCTAGCTGGAAAGGCTTTTGGATGCTTTATGAGTGGTTCAATTCTTATAAATGGCAGGAATGAATCAATCCACTCCTTCAAGAAAATTATTGGCTTTGTGCCACAAGATGATGTAGTTCATGGAAACCTGACAGTGGAAGAAAATCTCTGGTTCAGTGCACAATGCAGGCTATCTGCTGACTTGTCAAAACCAGAAAAAGTTCTGGTTCTTGAAAGAGTTATTGAATTCTTGGGGCTTCAGTCTGTGAGGAATTCCTTGGTTGGAACAGTGGAAAAGAGAGGGATCTCTGGCGGCCAAAGGAAGCGTGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCACTTCTGATCTTGGATGAACCCACTTCTGGTTTGGACAGTGCATCATCTCAGCTTCTTTTAAGAGCTCTAAGGCGCGAAGCGCTGGAGGGAGTGAACATTTGCATGGTGGTTCACCAACCCAGCTATGCTTTATTCAAGATGTTTGATGACTTGATACTTCTGGGAAAAGGTGGACTTACTGTCTATCATGGACCTTCCAAGAAAGTTGAAGAATACTTTTCTGGACTCGGGATTCATATACCGGAGCGAATCAACCCTCCGGATTACTTCATCGACATCTTAGAGGGCATAGTAAAACCTGGTGGTAGCTCAGGAGTGAGGTATAAAGAGCTACCAGTTAGATGGATGCTTTATAATGGATATCCAATACCACATGATATGCAGCAGAGTGCTGAACAGTATGACACGTCCGTAAGCATGAATTCGGCTATAGATTCCAGTTCATATGATCATGAGGGCAAAACCTTTGCTGGAGATCTATGGCATGATGTGAGAAACAATGTGGAACTGCAGGGGGAGAAGATCAGACTCAATTTCTTGAAATCCAAGGATTTATCGAACCGGAGAGCTCCCGGCATATTCAAGCAATATAAGTACTTTCTTATAAGGGTTGGGAAGCAGAGATTAAGGGAAGCTAGGATCCAAGCCATAGATTATCTGATCTTGTTACTTGCTGGAGCATGCTTAGGAACCCTTACCAAAGCAAGTGATCAAACATTTGGTGCAGCTGGATACACCTATACAGTGATTGCATTACACTACTGGAGGGAGAGTGATTCTGGGATGAGTAGCTTGGCTTATTTTCTCTCAAAAGACACAATTGATCAATTCAATACTGTGATAAAGCCTGTGGTGTACCTCTCAATGTTCTATTTCTTCACCAATCCAAGATCTTCTTTTGCTGATAACTATGTTGTGCTGCTTTGTCTTGTGTATTGTGTTACTGGCATAGCATATGCACTGGCCATACTTTTTGAACCTGGTGCAGCTCAGCTGTGGTCAGTACTACTTCCTGTTGTTTTGACTCTGATTGCAACACAACCAAAAGATAGTAAAATTTTGAAGGGTATAGCTAATATATGCTACTCTAAATGGGCTTTACAAGCATTTGTGGTTGCAAATGCTGAAAGGTATCAGGGAGTTTGGCTCATAACTCGTTGTGGATCACTAATGAAAAGTGGGTATAATCTTCATTATTGGAATTTGTGCATATCAGTCCTCATTCTTATGGGGGTAATTGGCAGGGCAATAGCATTTTTCTGTATGGTCACCTTCCAAAAGAAGTAG 1962 0.4128 MEARTKNLPPKGKKPLHTHSQIFNYAYTELEKEKAQQHENKNLTFSGVIKMATNTEKRKRPLIEISFKDLTLTLKSRNKPILRCVTGKIKPGRITAVMGSSGAGKTTFLSALAGKAFGCFMSGSILINGRNESIHSFKKIIGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVLERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFKMFDDLILLGKGGLTVYHGPSKKVEEYFSGLGIHIPERINPPDYFIDILEGIVKPGGSSGVRYKELPVRWMLYNGYPIPHDMQQSAEQYDTSVSMNSAIDSSSYDHEGKTFAGDLWHDVRNNVELQGEKIRLNFLKSKDLSNRRAPGIFKQYKYFLIRVGKQRLREARIQAIDYLILLLAGACLGTLTKASDQTFGAAGYTYTVIALHYWRESDSGMSSLAYFLSKDTIDQFNTVIKPVVYLSMFYFFTNPRSSFADNYVVLLCLVYCVTGIAYALAILFEPGAAQLWSVLLPVVLTLIATQPKDSKILKGIANICYSKWALQAFVVANAERYQGVWLITRCGSLMKSGYNLHYWNLCISVLILMGVIGRAIAFFCMVTFQKK 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242082g00003 653 Gene3D - 63 300 IPR027417 -
Stsc242082g00003 653 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 65 306 IPR003439 GO:0005524
Stsc242082g00003 653 FunFam ABC transporter G family member 24 59 301 - -
Stsc242082g00003 653 ProSitePatterns ABC transporters family signature. 206 220 IPR017871 GO:0005524|GO:0016887
Stsc242082g00003 653 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 35 640 - -
Stsc242082g00003 653 Pfam ABC-2 type transporter 263 653 IPR043926 GO:0140359
Stsc242082g00003 653 Pfam ABC transporter 84 234 IPR003439 GO:0005524
Stsc242082g00003 653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 289 IPR027417 -
Stsc242082g00003 653 CDD ABCG_EPDR 63 289 - -
Stsc242082g00003 653 SMART AAA_5 91 283 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242082g00003 Stsc-Chr242082 7764 10529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242082g00003 65 284 Calmodulin-binding Proteins AT2G36910 25.833 1.16e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242082g00003 - - adu:107467982 1103.2