Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242081g00009 ATGGAGGATTCGAAACCATTTGGAATGAAGCAAGAAGGGTATTCTAATCCTTCACCCATCATGAAAACAGAGGAATTATTGTTCAGACGCGGCAAGGTGAAGCAAGCATTGATGATATTTAGGGACTTGTTCTCAAAACTCTTGAGTGCGTACAAAACAGACTACTCTAATCCTGCGAAAGGAAAATATAAAGCTTTGAGAGATGCTGCAATGTTGATGAAGAAGAAGTATCAATGGGTGAACTGCCAAAAGAGGGTGGGACATGTCCCTGGGATTGAAGTTGGAGATCGGTTTCAGTATAGGAATGAACTCATTATTGTTGGTCTTCATCGCCAGTTTACTAATGGAATCGATTACGTGGGGAAGGGCAACTACTCTTTAGCCACAAGCATTGTTGTAACCAATCGCTATGATAATGCTAGAAACCATGGTGGTTCATTGGTTTATATTGGTCAAGGGTGGAATCCTAATGTGCGAAATGATTCTATGCCCTGCGATCAAAAGTTGGTTGGCGGAAATCTTGCTTTGAAGAATAGCATGGATGCTAGGAGACCCGTGCGGGTTATATTGAAGGTTGATGGAGAATATGTTGGAGGGATAGAGAACAACATCAATGACAAATTCTCATATATGTATGATGGATTGTATTTGGTTGAGAAGATGACACAAGAAAGAGGAACTCATGGGAAACTTGTGTTTAAGTTTTTGTTGAACAAAATCGTAGAGAAACCTTCAAAATGTGTTTCACCGAAGGATGGGCTTATCAAGAATGGCAATAAATTTGGGCAACTTGATGCTTTCACTTTAAGGAAAAGGCTCAAACCTAATTGCTATGCAACTAAGGATGTTATTATCATGAATGATATCTCCAAAGGACAAGAGAAGTTTCCTATTCGAGTGGTTACATCAACTAATGGTGATCTGTCTTTTGATTACATAGTCAACAACATTTATGTGGATAGCTTCAAGAAGCCAATGTTATGTGGTTGTGATTGTGTAAATGGTTGTGTAGATTGTGAGAAATGTGCTTGTATTGTTAAGAACTGTGGAACAATACCATATGATTCTAAGAAAAGACTCACTTCTAGAGTGGAATCATGTGCTATATACGAGTGCGGCTCTTCTTGCAAGTGTTCCTCGTCTTGCTTCAACCGAGCAAGTCAATCTGGCCTTCAATTCCAACTTGAAATCTTCCATACCGAATCAAAGGGCTGGGGTGTTAGGACACGCTCTTTCATTCCCTCTGGAGTCTTTGTTTGTGAGTATGTTGGTGAAGTTCATCATCGTAGAGAAGCTGGATCTAGGCAAAACCTTGATAGTTATATTGTAAATATGGCTGTCAACGAGTGCTTCATCGATGCTACAAGACATGGAAACATTGGAAGATTCATAAACCATAGCTGTTCTCCTAATCTTCAGGCCGTAGAAGTTGTGTATGATGACAAGGATAAGAACCTTCCTCATATAATGTTCTTTGCATTACAGGACATACCTGCGGGAAGAGAGGTGACTTTTGATTATAACAGCTGCAAGCCAAGATTTATCAGGACTGGCAATAATGCTTGCCATTGTGGTTCGCCCAAATGCGTTGGGCGGATTTACATTTAA 1608 0.3999 MEDSKPFGMKQEGYSNPSPIMKTEELLFRRGKVKQALMIFRDLFSKLLSAYKTDYSNPAKGKYKALRDAAMLMKKKYQWVNCQKRVGHVPGIEVGDRFQYRNELIIVGLHRQFTNGIDYVGKGNYSLATSIVVTNRYDNARNHGGSLVYIGQGWNPNVRNDSMPCDQKLVGGNLALKNSMDARRPVRVILKVDGEYVGGIENNINDKFSYMYDGLYLVEKMTQERGTHGKLVFKFLLNKIVEKPSKCVSPKDGLIKNGNKFGQLDAFTLRKRLKPNCYATKDVIIMNDISKGQEKFPIRVVTSTNGDLSFDYIVNNIYVDSFKKPMLCGCDCVNGCVDCEKCACIVKNCGTIPYDSKKRLTSRVESCAIYECGSSCKCSSSCFNRASQSGLQFQLEIFHTESKGWGVRTRSFIPSGVFVCEYVGEVHHRREAGSRQNLDSYIVNMAVNECFIDATRHGNIGRFINHSCSPNLQAVEVVYDDKDKNLPHIMFFALQDIPAGREVTFDYNSCKPRFIRTGNNACHCGSPKCVGRIYI 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242081g00009 535 ProSiteProfiles Post-SET domain profile. 518 534 IPR003616 -
Stsc242081g00009 535 SMART set_7 393 514 IPR001214 GO:0005515
Stsc242081g00009 535 SMART preset_2 286 377 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc242081g00009 535 Gene3D SET domain 267 517 IPR046341 -
Stsc242081g00009 535 SUPERFAMILY SET domain 278 514 IPR046341 -
Stsc242081g00009 535 Gene3D - 68 260 IPR036987 -
Stsc242081g00009 535 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 21 527 - -
Stsc242081g00009 535 ProSiteProfiles YDG domain profile. 87 239 IPR003105 -
Stsc242081g00009 535 SMART G9a_1 82 243 IPR003105 -
Stsc242081g00009 535 ProSiteProfiles Pre-SET domain profile. 328 390 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc242081g00009 535 Pfam Pre-SET motif 289 385 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc242081g00009 535 SUPERFAMILY PUA domain-like 69 245 IPR015947 -
Stsc242081g00009 535 Pfam SAD/SRA domain 86 240 IPR003105 -
Stsc242081g00009 535 Pfam SET domain 404 508 IPR001214 GO:0005515
Stsc242081g00009 535 ProSiteProfiles SET domain profile. 393 508 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242081g00009 Stsc-Chr242081 38036 41622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242081g00009 62 531 Su(var)3-9 homologs AT1G73100 34.363 4.38e-76 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc242081g00009 SAD_SRA 2.6e-40 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242081g00009 - K11420 aip:107627681 638.647