Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242081g00006 ATGGACATGGACGTCGACGAAGCTTCTCGACCCAAAGGCGGAAAGCCCATTTTGGTCATTTTAGTGGGAGCACCGGGGAGTGGCAAATCAACTTTCTGTGAAGAAGTGATGCGTTCTTCAGCTCGCCCTTGGGTTCGCGTTTGCCAGGACACCATTGGAAATGGAAAAGCAGGAAGTAAAGCTCAATGCCTAAGTAGTGCAGCTAGTTCATTGAAGGATGATAAGAGTGTGTTTATTGACAGATGCAATCTTGACAGAGAGCAGCGCTCTGAATTCCTAAAGCTAGGTGGTGTGCACAAAGTAGATGTGCATGCAGTTGTGCTTGATCTTCCTGCTAAACTCTGTATTTCTCGATCCGTTAAACGGACTGGGCATGAAGGAAATCTTCAGGGTGGAAAAGCTGCAGCTGTTGTGAATAGAATGCTTCAAAAGAAAGAGCTGCCCAAATTAAGTGAAGGCTACAACCGGATAACATTTTGTCAGAGTGAGAGTGACGTCAAAGATGCCGTTAATACATACAGCTCTCTTGGGCCACTGGATAACCTCCCGCATGGCTGCTTTGGCCAGAAAAATCCAGATTCAAAAGTTCAAGTTGGTATAATGAAGTTCCTAAAAAAGGTGGCAGCCCCTGATGCTGCAGCAAGACCTGATGGAACTGGAAACACTACTTCCCAAACTCCTGGGAAAATTGATTCTCCCCACAAAGATGTAGAAATGGCATCCCCAACTCTAGATAGTCCCAACTTAGAGTCAAAGGAAGGAGAAAGCCAGGGAGTGGCCTTCGGTGGTTCCCATGCCAGTCGAGTTTCTTTGGATGATGCTCCCACTCTGGCATTTCCATCTATTTCAACAGCTGATTTCCAATTCAATTGTGAAAAGGCAGCTGATATTATTGTTGAGAAGGTTGCGGAGTTTACAGCTAAGCTTGGCAATGCTAGACTCGTGCTGGTTGATTTGACTCATAAATCAAAGATTCTCTCCGTAGTTAAAGCCAAAGCATCTGAAAAACACATTGACACCCAAAAGTTTCTTACCCATGTCGGTGACATTACTAAACTTCATTCTACAGGAGGTTTAAACTGTAATGTCATAGCTAATGCTGCCAACTGGCGGTTAAAACCCGGAGGTGGAGGTGTTAATGCTGCCATTTTTAATGCTGCGGGTCCTGAGCTGGAGTCTGCAACCAAAGAAAGAGCAAAATCTCTTTCACCTGGAAATGCTGTTGTTGTCCCTCTTCCTGCATCTTCTCCTTTGTTTGTTACAGAGGGCATAACCCATGTCATACATGTTCTTGGACCTAATATGAACCCTCAAAGACCAAATTGTCTCAACAATGATTATGAAAAAGGATGCAAAATTCTTCAAGATGCTTATGCNNNNNNNNNNCGCATCAATTGTGAAGACCCAGACAGGGCAATCTAA 1422 0.4409 MDMDVDEASRPKGGKPILVILVGAPGSGKSTFCEEVMRSSARPWVRVCQDTIGNGKAGSKAQCLSSAASSLKDDKSVFIDRCNLDREQRSEFLKLGGVHKVDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGYNRITFCQSESDVKDAVNTYSSLGPLDNLPHGCFGQKNPDSKVQVGIMKFLKKVAAPDAAARPDGTGNTTSQTPGKIDSPHKDVEMASPTLDSPNLESKEGESQGVAFGGSHASRVSLDDAPTLAFPSISTADFQFNCEKAADIIVEKVAEFTAKLGNARLVLVDLTHKSKILSVVKAKASEKHIDTQKFLTHVGDITKLHSTGGLNCNVIANAANWRLKPGGGGVNAAIFNAAGPELESATKERAKSLSPGNAVVVPLPASSPLFVTEGITHVIHVLGPNMNPQRPNCLNNDYEKGCKILQDAYAXXXRINCEDPDRAI 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242081g00006 473 Pfam AAA domain 18 144 - -
Stsc242081g00006 473 SUPERFAMILY Macro domain-like 325 459 IPR043472 -
Stsc242081g00006 473 FunFam Transcription factor bHLH140 6 175 - -
Stsc242081g00006 473 FunFam Transcription factor bHLH140 323 463 - -
Stsc242081g00006 473 Gene3D Leucine Aminopeptidase, subunit E, domain 1 318 460 IPR043472 -
Stsc242081g00006 473 Gene3D - 3 175 IPR027417 -
Stsc242081g00006 473 PANTHER APRATAXIN-RELATED 277 364 - -
Stsc242081g00006 473 SMART YBR022w_8 342 467 IPR002589 -
Stsc242081g00006 473 ProSiteProfiles Macro domain profile. 330 473 IPR002589 -
Stsc242081g00006 473 MobiDBLite consensus disorder prediction 211 264 - -
Stsc242081g00006 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 160 IPR027417 -
Stsc242081g00006 473 Pfam Macro domain 365 442 IPR002589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242081g00006 Stsc-Chr242081 20309 24755 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242081g00006 14 458 C2H2 Transcription Factor Family AT5G01310 65.169 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242081g00006 K10863 - gmx:100786762 720.309