Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242081g00005 ATGGAAAGAGGAAACTTATTTTATGCCTTGAGAATTGATGATGAAGCTGAGAAGCTAAGTTGGAGCCAGTGGGTGAATATCATTATCGGAACCGCGAATGCATTGGCTTACATGCATCATGATTGTTACCCACCAATAGTTCACAGAGATGTCACAAGCAGCAACATTTTGTTGAATTCTGAGTTGCATGCTGTTGTCTCTGATTTTGGCACTGCTAGACTTCTTGATCCAGATTCTTCAAACAAAACCTTGCAAGTTGGAACATATGGATATGTTGCCCCAGAGTTTGCATACACATTGACTGTGACAGAGAAATGTGATGTATACAGTTTTGGAGTGCTGGCATTGGAAACAATAACGGGAAGACACCCGAGAGCTAATCTTGTCTTTGTTAGATTCTTGTAA 405 0.4049 MERGNLFYALRIDDEAEKLSWSQWVNIIIGTANALAYMHHDCYPPIVHRDVTSSNILLNSELHAVVSDFGTARLLDPDSSNKTLQVGTYGYVAPEFAYTLTVTEKCDVYSFGVLALETITGRHPRANLVFVRFL 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242081g00005 134 PANTHER LEUCINE RICH REPEAT KINASE 2 1 125 - -
Stsc242081g00005 134 SMART serkin_6 1 131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242081g00005 134 ProSiteProfiles Protein kinase domain profile. 1 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242081g00005 134 Pfam Protein kinase domain 1 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242081g00005 134 Gene3D Transferase(Phosphotransferase) domain 1 1 131 - -
Stsc242081g00005 134 ProSitePatterns Tyrosine protein kinases specific active-site signature. 46 58 IPR008266 GO:0004672|GO:0006468
Stsc242081g00005 134 SUPERFAMILY Protein kinase-like (PK-like) 1 126 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242081g00005 Stsc-Chr242081 19193 19675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242081g00005 15 123 Receptor kinase-like Gene Family AT5G25930 55.357 1.42e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc242081g00005 Pkinase 3.5e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242081g00005 - - gmx:100789677 202.216