LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc242077g00005	ATGAATTGGGGAATTGAAGTTCTCTCTCCTTCTTCCTATCTCCAAAGTTCTAGCTGGTTGTTCCAAGAAACCAAAGGAGCCAAATGGACTCCACAGGAGAACAAGCTCTTTGAGAATGCTCTGGCTTTGTGTGATCCAAACACCCCAGATCGGTGGGTGAGGGTGGCAGCGATGATTCCCAGTAAAACAATTGGTGATGTGATCAAACACTATAGAGAACTTGAAGAGGATGTGAGTGTCATTGAAGCAGGCTTGATCCCTATTCCGGGGTATGATGATTCTGCTTCTTTCTCATTCAAGTGGTTTGGCAATCATGGCTTTGATGAGTTTAAGCAGTTTTATAGTGCTGTGGGGAAAAGGGGTGGTTCCAACAGGCCAACTGAGCAAGAAAGAAAGAAAGGAGTGCCATGGACAGAGGAGGAGCACAGGCAATTTCTTCTGGGTCTCAAGAAGTATGGTAAAGGAGATTGGAGAAACATCTCAAGGAGTTTTGTGACGACAAGAACACCTACTCAGGTTGCAAGCCATGCTCAGAAGTACTTCATTCGGCAGCTTACAGGATTGAAGGATAAGAAGAGATCGAGTATCCATGATATCACCATGGTCAATCTTCCGGAAATGAAATCACCTTCATGGGACACTACTATAACTTCTCCTGTTCACTTGGTAATAAACACGGTGAATCCGCAACAGAATCAGAAACTGGCATGTGAGGACATGCCAATGGTTTTTAAGTCAACAAGTGGAAACATGTATGCACCTTTGAGGGGGATTTCTTCACATGGATCTAAACTAAAGGATCATGGTTTTTTCATGAGCACTCTTCATGGTTGCACCACATGA	843	0.4389	MNWGIEVLSPSSYLQSSSWLFQETKGAKWTPQENKLFENALALCDPNTPDRWVRVAAMIPSKTIGDVIKHYRELEEDVSVIEAGLIPIPGYDDSASFSFKWFGNHGFDEFKQFYSAVGKRGGSNRPTEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRSFVTTRTPTQVASHAQKYFIRQLTGLKDKKRSSIHDITMVNLPEMKSPSWDTTITSPVHLVINTVNPQQNQKLACEDMPMVFKSTSGNMYAPLRGISSHGSKLKDHGFFMSTLHGCTT	280

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc242077g00005	280	MobiDBLite	consensus disorder prediction	118	137	-	-
	Stsc242077g00005	280	Pfam	Myb-like DNA-binding domain	28	73	IPR001005	-
	Stsc242077g00005	280	Pfam	Myb-like DNA-binding domain	136	181	IPR001005	-
	Stsc242077g00005	280	SUPERFAMILY	Homeodomain-like	28	82	IPR009057	-
	Stsc242077g00005	280	ProSiteProfiles	SANT domain profile.	137	185	IPR017884	-
	Stsc242077g00005	280	SMART	sant	133	183	IPR001005	-
	Stsc242077g00005	280	SMART	sant	25	77	IPR001005	-
	Stsc242077g00005	280	SUPERFAMILY	Homeodomain-like	130	184	IPR009057	-
	Stsc242077g00005	280	FunFam	Transcription factor SRM1	21	88	-	-
	Stsc242077g00005	280	Gene3D	-	21	88	-	-
	Stsc242077g00005	280	Gene3D	-	135	185	-	-
	Stsc242077g00005	280	ProSiteProfiles	Myb-like domain profile.	129	181	IPR001005	-
	Stsc242077g00005	280	CDD	SANT	28	74	IPR001005	-
	Stsc242077g00005	280	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	129	185	IPR017930	-
	Stsc242077g00005	280	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	24	232	IPR043363	-
	Stsc242077g00005	280	FunFam	transcription factor MYB1R1	135	186	-	-
	Stsc242077g00005	280	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	132	184	IPR006447	GO:0003677
	Stsc242077g00005	280	CDD	SANT	136	181	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc242077g00005	Stsc-Chr242077	10871	12918	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Stsc242077g00005		Myb_DNA-binding	4.4e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc242077g00005	-		-	gmx:100775697	388.652