Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242076g00001 ATGGGAACTCTGGAGAGGAGTCCTTTGGTAAGAATGGAGGTTCCAGTCTCCAAACAAGAACAGCCAAATAAGCTTATTGGTGGCAACAGTCCTCACACAACCTCAAAATGCTCTAGAACTTTTGGCCTTTCAAAGAAAAGAAAGCTTCAAGAAAATCACAAGCATGATGTTACAGAACCAAAGTCAGAAGGGAAAGAAGACTTTCTGATCAGTTCAAACAGGACTACCAGAAAGGTGAATGAACAAAAAAAACACAATAAATCAAATAAGAATGACCAATACAAAGATGATCCCTTGTTTGAAGATTTGGATGATGATGAGGAAATGTTTTTCCTTCTAAAGACAAAGTACACAAGAAGGGCTAGGAGAATGGATGATAATGTTACGGTTGTTGAACAAAACCCCCGCAAATGTCATCAATGCATGAAGAAGGAGCGAACAACTTTTGTGCCTTGTGCTAAATGTCAGAAAATGTACTGTCTGCGGTGCATCAACCAGTGGTACCCTGATATGTCAATAGAAGAAATTGCTGAAAGTTGCCCATGTTGCCGTAATAATTGCAATTGCAATGTTTGTTTGTGTTCAAGAGGAACAATTAAGACATCTACCAAGGAGATAACTGATAGTGAAAAGATTCAGCATCTACATTATATGGTTAACTTACTCGTTCCATTTCTGAAAGAAATTCGTCATGAACAGAGTCAAGAGGAAGAGATTGAAGCTAAAATACAAGGTTGTCATATTGAGATACCGCAGAGTCTTTGTGGCGACAATGAACGTGTCTATTGTGATCATTGTGCCACCTCAATTGTCGACCTCCATCGAAGCTGTCCGAATTGTTCCTTTGAACTTTGCCTAAATTGTTGCCAAGAAATTCGCAATGGAAGCATTACATCACGGTCAGAGCTGAAGTTCCAATATTTGAATAAAGGTTATGATTACATGCATGGTGGTGATCCTCTTCCAGTATTGCCTGCTCTAGAGGCCTCAAATGTTAATGTTCAACTATCTTCCTTGTGGAATGCTGATAGTGATGGAAGGATCAGCTGTGCACCGAAGGAGGTTGGGGGTTGTGGTAGTTCTATGTTAGAGCTGAGGTGTATCCTACCACATGGATGGCTATCTAGATTGGAAGCTAAAGCGCAAGAGATGCTGAGGTTTTGTGAAATAAAACTAAAAACAGTTCAACCAAAAGAAGCAGAATCAAGCTATAACCTAATGAGAAGGGCAGCATTCAGAGAAGGCACAAATGACAATAACATATATTGTCCAGAGTCTGGGGACATCTCAAAGGAAAGCTTCTTGTTATTTCAAAAGCATTGGTCTAATGGTGAACCAGTTATAGTCCGTGATGTTCTAAAGCAGGGAACTGGTCTGAGCTGGGAGCCAATGGTCATGTGGCGAGTTTTATGCGAAAGTTCAGTTTCAGAAATTAGCTCAAAAATGTCAGAAGTGAAGGCTATGGATTGCCTAGCTGGTTGTGAGGTAGAAATTAATACGCATAAGTTCTTTAAAGGATATACTGGGGGAAGAACATATAGAAATCTCTGGCCAGAGATGCTCAAGCTAAAAGATTGGCCCCCTTCAGACAAGTTTGAAGATCTTCTTCCTCGCCATTGTGATGAGTTTATACGTTGCTTGCCATTTCAAGAGTATAGTGATCCCCGTGCTGGAATTGTCAATCTTGCTGTGAAATTACCAGCCCATGTCCTTAAGCCTGATATGGGTCCAAAAACTTATATAGCTTATGGAATTAAAGAAGAACTTGGGAGAGGAGACTCTGTCACAAAGCTTCACTGTGATATGTCAGACGCGGTTAATATTTTGACACATACAGCTGAGGTTACACTCAGTGAAGAACAGTATTCTGTCATTTCCAAGCTGAAAGAAGCACATGCAGCACAAGATAAGGAAGAACTCTGGTCTGAAGAGAGAAATTTTGAGTACCCAAGTGTTCAACCTTGCAAAGATGAGAAAGAACGAATAGAAGATAAGGAAGCAGTAAACCCCCAAGATAATATCAAGAAGTGTAATGGGATGGTCTTTCCCCGTGAGAAGTTTGAGGGGGCTGATTCCCAAGATATCTCTAACGAAAGTGAAATTGGAGAAACAAGTGGTGCTTTATGGGATATCTTTCGTAGAGAGGATGTTGAAAAGTTGGAAACATATCTAACTAAACATTCAAAGGAATTTAGACACACTTATTGTTCTCCAGTTGACCAGGTTGTCCATCCGATTCATGACCAATGCTTTTATTTGAATATGGAGCACAAAAGGAAGTTGAAGGAGGAGCTTGGTGTAGAGCCATGGACATTTGAGCAGAAACTTGGCGAGGCAGTGTTTATTCCTGCTGGATGCCCGCACCAAGTGAGAAATATCAAGTCATGTACAAAAGTTGCTGCAGACTTTGTCTCCCCCGAAAATATCGGTGAGTGTCTGCGTTTAACTAATGAGTTTCGGAAGCTTCCGAAGAACCACAAGGCTCGTGAAGATAAATTGGAGATAAAGAAAATGATAGTGTATGCACTTGATCAAGCTCTGAAAGACCTGCAAGTTTTGATTAACTGTTCTTGA 2574 0.4048 MGTLERSPLVRMEVPVSKQEQPNKLIGGNSPHTTSKCSRTFGLSKKRKLQENHKHDVTEPKSEGKEDFLISSNRTTRKVNEQKKHNKSNKNDQYKDDPLFEDLDDDEEMFFLLKTKYTRRARRMDDNVTVVEQNPRKCHQCMKKERTTFVPCAKCQKMYCLRCINQWYPDMSIEEIAESCPCCRNNCNCNVCLCSRGTIKTSTKEITDSEKIQHLHYMVNLLVPFLKEIRHEQSQEEEIEAKIQGCHIEIPQSLCGDNERVYCDHCATSIVDLHRSCPNCSFELCLNCCQEIRNGSITSRSELKFQYLNKGYDYMHGGDPLPVLPALEASNVNVQLSSLWNADSDGRISCAPKEVGGCGSSMLELRCILPHGWLSRLEAKAQEMLRFCEIKLKTVQPKEAESSYNLMRRAAFREGTNDNNIYCPESGDISKESFLLFQKHWSNGEPVIVRDVLKQGTGLSWEPMVMWRVLCESSVSEISSKMSEVKAMDCLAGCEVEINTHKFFKGYTGGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRCLPFQEYSDPRAGIVNLAVKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVTLSEEQYSVISKLKEAHAAQDKEELWSEERNFEYPSVQPCKDEKERIEDKEAVNPQDNIKKCNGMVFPREKFEGADSQDISNESEIGETSGALWDIFRREDVEKLETYLTKHSKEFRHTYCSPVDQVVHPIHDQCFYLNMEHKRKLKEELGVEPWTFEQKLGEAVFIPAGCPHQVRNIKSCTKVAADFVSPENIGECLRLTNEFRKLPKNHKAREDKLEIKKMIVYALDQALKDLQVLINCS 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242076g00001 857 CDD cupin_RmlC-like 744 793 - -
Stsc242076g00001 857 SUPERFAMILY Clavaminate synthase-like 433 845 - -
Stsc242076g00001 857 MobiDBLite consensus disorder prediction 22 40 - -
Stsc242076g00001 857 Gene3D Cupin 420 829 - -
Stsc242076g00001 857 ProSiteProfiles Zinc finger RING-type profile. 138 184 IPR001841 -
Stsc242076g00001 857 MobiDBLite consensus disorder prediction 1 97 - -
Stsc242076g00001 857 Pfam JmjC domain, hydroxylase 703 803 IPR003347 -
Stsc242076g00001 857 SMART cupin_9 536 820 IPR003347 -
Stsc242076g00001 857 MobiDBLite consensus disorder prediction 44 72 - -
Stsc242076g00001 857 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 42 853 IPR045109 GO:0032454|GO:0033169
Stsc242076g00001 857 ProSiteProfiles JmjC domain profile. 555 820 IPR003347 -
Stsc242076g00001 857 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 134 203 IPR018866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242076g00001 Stsc-Chr242076 19728 24118 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc242076g00001 JmjC 8.1e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242076g00001 K15601 K21989 gmx:100797860 1163.29