Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242075g00003 ATGGATATTGGAAGCACGTGCAAGAGGCCAAAGGCACGTGCACAAAATCAAGGAACCACCCTCGCCGTAACCGACGCCTCCTCCGCCACCGTCTGTGGCGTTGTTGCGGCGTCACAGACCCGCCGAATCCAGTGCTACCGCCGGGGAAGCGGCGGAGCAATTGTCCCCGTCTTCCCGGACGTTTCATTCTCTTCAATCTCCGGCGGCCGGAGCTACTTCTGCGGCCTTCGTTCCGGCAACTACAGCCTCCTCTGCTGGGACACCACCACCACCAACGCCACCACCTTCGAAAGCAAGCGACTTTACAACAATGACACTGTTCTATTCGAGAATCTCGCCGTTGGAGACTCCCAGGTTTGCGCCACCGTTGTCGGAACCGGAACGGCGTCATGTTGGAGAGCCGGTAGAAGCAAAGGTTCGTACTTTTCATCTGGGTCGGATCGGTTCGAGTCCATATCATCCGGGTCTGGTTTTTCATGTGGTATTATGAAGGAAAGTTTTCGAATTCGATGTTGGGGAAGTAACGTTTCGGTTGCAGATTCCATAGAGAGAGAGTTTCGAAACGTTTCTATGTTGAGCATTGTGGCTGGCGGTTCTCACTTGTGTGGTTTGAATTCAACTGGGTTTTTGGTTTGTAAAGGAAGTAACAGTTTTGGGCAAATTGAGGTTCCTCATCAAGGTGTTGCTTTTGAATATTCTGGTTTGGCTCTCGGTGATTATCATACTTGTGCTATTAGAAGATCCAATGGTTCTGTTTTCTGTTGGGGTGGCAATGGAGACTTCAATGCTAATTTCACAAAAGGTTTGTCTTTTGAAGTTATTGTTTCTGGGTCTGATTTTGTCTGTGGATTGACTACAAGAAATTTCTCTGTTTTGTGTTGGGGTCCTGGTTGGTCTAATGCTTCTGGTTCTGATTTTGAGGTTCCTTTTTTGTCTCCAATTCTTCCGGGTCCTTGTGTTCAATCATCTTGTAGTGAGTGTGGTATTTATCCTCAATCTCAATTCTTGTGTTCTGGTTTTGGTAACATTTGTAGGCCTAAGCCTTGTGGGCCTCAAGTGCCGGTGATGCCGGCGAGGCCTCCAGCGGTTGTGCCATTGCCTCCCCCGCCGTCTTCTCGGTCGAAGACCTTGACAATGGGGTTGTTGGCATTTGCCATAGTTGGATCAGTGGGTGCTATTGCTGGAATTTGCACTGTGCTTTATTGTTTGTGGAATGGTGTTTGTTTTGGGAAGAAGAAAATTCATAATTCTGTTCAACCAACAATAACTAGAGGTGGCAGTTCCAACAACGGTGGTGGGGCTGTTCAATCTAATAGCCCGCCGTCGATATCATTGACCATTAGGCGTCAGGGATCGAGGATAATGCGGCGGCAGAGAAGTGGAACCTCGTCGACGAAACCTCCAGACAGGGCTGAGGAGTTCACACTAGCTGAGCTTAGTGCTGCAACCGATAATTTTTCACTCGAGAACAAGATTGGCGCTGGGAGCTATGGCATTGTGTACCGAGGAAAACTCGCAGATGGCCGTGAGGTGGCGATCAAGAGAGGGGAAACAGGTACCAAGATGAAGAAGTTTCAAGAGAAAGAGAGTGCATTTGAGTCAGAATTGGCCTTCTTGTCCAGATTACACCACAAGCATTTGGTTAGGCTTGTTGGATTCTGTGAAGAGAAAGATGAGAGGCTCTTAGTTTATGAATACATGAAGAATGGAGCATTGTATGATCATTTGCATGACAAGAACAATGTGGATAAGAATAGTAGTGTCTTGAATTCTTGGAGAATGAGGATCAAAATCGCCTTGGACGCTTCGCGAGGGATCGAGTATCTCCATAATTATGCAGTTCCGTCGATAATTCACCGAGATATCAAGTCTTCCAACATTCTTATTGATGCCACTTGGACAGCAAGAGTATCCGATTTCGGATTGTCATTGATGAGTCCGGAATCCAATCTTGATTACCGGCCGACAAAGGCAGCCGGAACAGTTGGATACATTGATCCTGAGTACTACGGTCTAAATGTATTGACAGCAAAGAGTGATGTCTATGGTCTTGGAGTGGTGTTGCTAGAACTCTTAACCGGAAAGCGAGCCATATTCAAAATCGACGAAACTGGAAGCACTCCGGTGAGCATAGTGGACTTTGCAGTGCCTACTATCAAGGCCGGGGAATTGGCGAAAATTTTGGACCCTAGGGTTGCCCCGCCGGAGATGAGCGAAATGGAAGCTGTGGAGCTTGTGGCCTACACTGCAATGCATTGTGTAAATTTGGAAGGAAAGGATAGACCAACAATGGCTGACATTGTGGCCAATTTGGAGCGAGCTTTGGCCCTTTGTGATAGTAGTAGCCATGGCAGCATTTCTAGTGGTACAATCTCAATTGTATCAGAATAA 2391 0.4734 MDIGSTCKRPKARAQNQGTTLAVTDASSATVCGVVAASQTRRIQCYRRGSGGAIVPVFPDVSFSSISGGRSYFCGLRSGNYSLLCWDTTTTNATTFESKRLYNNDTVLFENLAVGDSQVCATVVGTGTASCWRAGRSKGSYFSSGSDRFESISSGSGFSCGIMKESFRIRCWGSNVSVADSIEREFRNVSMLSIVAGGSHLCGLNSTGFLVCKGSNSFGQIEVPHQGVAFEYSGLALGDYHTCAIRRSNGSVFCWGGNGDFNANFTKGLSFEVIVSGSDFVCGLTTRNFSVLCWGPGWSNASGSDFEVPFLSPILPGPCVQSSCSECGIYPQSQFLCSGFGNICRPKPCGPQVPVMPARPPAVVPLPPPPSSRSKTLTMGLLAFAIVGSVGAIAGICTVLYCLWNGVCFGKKKIHNSVQPTITRGGSSNNGGGAVQSNSPPSISLTIRRQGSRIMRRQRSGTSSTKPPDRAEEFTLAELSAATDNFSLENKIGAGSYGIVYRGKLADGREVAIKRGETGTKMKKFQEKESAFESELAFLSRLHHKHLVRLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVDKNSSVLNSWRMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSLMSPESNLDYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKIDETGSTPVSIVDFAVPTIKAGELAKILDPRVAPPEMSEMEAVELVAYTAMHCVNLEGKDRPTMADIVANLERALALCDSSSHGSISSGTISIVSE 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242075g00003 796 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 187 782 IPR044815 GO:0004674
Stsc242075g00003 796 SMART serkin_6 486 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242075g00003 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Stsc242075g00003 796 Gene3D - 8 188 IPR009091 -
Stsc242075g00003 796 FunFam Serine/threonine-protein kinase-like protein CCR4 567 788 - -
Stsc242075g00003 796 Gene3D Transferase(Phosphotransferase) domain 1 567 785 - -
Stsc242075g00003 796 FunFam serine/threonine-protein kinase-like protein CCR1 455 566 - -
Stsc242075g00003 796 Pfam Protein kinase domain 487 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242075g00003 796 Gene3D Phosphorylase Kinase; domain 1 448 566 - -
Stsc242075g00003 796 ProSitePatterns Protein kinases ATP-binding region signature. 492 514 IPR017441 GO:0005524
Stsc242075g00003 796 Pfam Regulator of chromosome condensation (RCC1) repeat 236 260 - -
Stsc242075g00003 796 MobiDBLite consensus disorder prediction 421 471 - -
Stsc242075g00003 796 ProSiteProfiles Protein kinase domain profile. 486 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242075g00003 796 SUPERFAMILY Protein kinase-like (PK-like) 464 771 IPR011009 -
Stsc242075g00003 796 Gene3D - 189 327 IPR009091 -
Stsc242075g00003 796 MobiDBLite consensus disorder prediction 421 469 - -
Stsc242075g00003 796 SUPERFAMILY RCC1/BLIP-II 14 259 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242075g00003 Stsc-Chr242075 24756 29078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242075g00003 18 796 Receptor kinase-like Gene Family AT3G55950 60.474 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Stsc242075g00003 Pkinase 8.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242075g00003 - - gmx:100798905 1159.44