Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242073g00004 ATGGGGTTGGCAGCTGGAGGAGCTAGGGGAGGTGCACCTATGGCTAGAATTGCTGTCTACAAGACATGCTGGGATTCAGGTTGCTATGATGTGGACTTACTAGCTGCATTTGATGGTGCAATAAGAGATGGGGTTCACATTTTGTCACTATCTCTTGGAGCTGAGTCTCCACAAGGAGACTATTTCAGTGATGCAATATCTGTGGGGTCATTCCATGCTGCCAACCGTGGTGTGCTTGTTGTGGCATCAGCTGGCAATGAAGGCCATCCTGCTTCTGCAACTAATCTTGCCCCATGGATCCTCACTGTTGCTGCCAGCTCAACAGACAGGGATTTCACTTCTGACATCATTTTTGGAAATGGTGTTAGAATCATGGGTGAAAGTCTCAGTATCTCAGAAATGAATGCATCAACAAGTATAATATCTGCTGCTGAAGCCTTTGCAGGATACTTTACCCCTTATCAATCCAGTTTCTGTTTAGAGAGCTCCCTGAATAAGACCAAGACCAAAGGGAAAGTGCTAGTTTGTAGGCATGTAGAGAGTTCAACAGAATCAAAGGTGGCAAAGAGCAAGATAGTGAAAGATGCAGGAGGAGTTGGAATGATACTCATTGATGAGACAGATCAAGATGTTGCAATTCCATTTGTGATCCCCTCAGCTATTGTTGGAATGAGAACAGGAGCAAGGATTCTATCTTATCTCAGAAGAACACGTTCTCCTATGTCAAGGATTTTCAAAGCAAAGACAGTTCTAGGAGCTCAGCCTGCGCCGCGTGTAGCTTCATTTTCGTCTAAAGGCCCCAATGCACTCAACCCTGAAATTTTGAAGCCTGATGTGACTGCACCAGGACTGAATATACTTGCAGCATGGTCTCCAGCAGCTGGAAACATGTTCAACATTCTCTCTGGAACTTCCATGGCTTGTCCTCATGTCACAGGAATTGCAACCATAGTCAAAGCTGTACATCCTTCTTGGTCTCCATCCGCTATCAAATCTGCTATCATGACCACTGCTACAATTCTGGACAAGCACCACAGACCGATTAGTGTGGATCCGCAGCAAAGAAGGGCTAATGCATTTGACTACGGATCAGGGTTTGTGAACCCTGCAAGAGTTCTTGATCCTGGTCTCATTTATGATTCAGAGCCATCAGATNNNNNNNNNNACTCCATCTTGTCACAAGGAACAACAACAGCACATGTGATCAAAGAACACTTTCATCTGCTTCCGATCTTAACTATCCATCAATTGCAGTGCCAAATCTCAAAGACAGTGCCTCAGTAA 1284 0.4463 MGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDGAIRDGVHILSLSLGAESPQGDYFSDAISVGSFHAANRGVLVVASAGNEGHPASATNLAPWILTVAASSTDRDFTSDIIFGNGVRIMGESLSISEMNASTSIISAAEAFAGYFTPYQSSFCLESSLNKTKTKGKVLVCRHVESSTESKVAKSKIVKDAGGVGMILIDETDQDVAIPFVIPSAIVGMRTGARILSYLRRTRSPMSRIFKAKTVLGAQPAPRVASFSSKGPNALNPEILKPDVTAPGLNILAAWSPAAGNMFNILSGTSMACPHVTGIATIVKAVHPSWSPSAIKSAIMTTATILDKHHRPISVDPQQRRANAFDYGSGFVNPARVLDPGLIYDSEPSDXXXXSILSQGTTTAHVIKEHFHLLPILTIHQLQCQISKTVPQ 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242073g00004 427 Gene3D Peptidase S8/S53 domain 2 385 IPR036852 GO:0004252|GO:0006508
Stsc242073g00004 427 SUPERFAMILY Subtilisin-like 5 377 IPR036852 GO:0004252|GO:0006508
Stsc242073g00004 427 Pfam Subtilase family 7 341 IPR000209 GO:0006508|GO:0008236
Stsc242073g00004 427 ProSitePatterns Serine proteases, subtilase family, serine active site. 303 313 IPR023828 -
Stsc242073g00004 427 Gene3D - 109 251 - -
Stsc242073g00004 427 FunFam subtilisin-like protease SBT1.5 109 251 - -
Stsc242073g00004 427 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 2 401 IPR045051 -
Stsc242073g00004 427 CDD PA_subtilisin_like 115 244 - -
Stsc242073g00004 427 ProSiteProfiles Serine proteases, subtilase domain profile. 1 373 - -
Stsc242073g00004 427 Pfam PA domain 147 230 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242073g00004 Stsc-Chr242073 17115 19675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242073g00004 2 380 Subtilisin-like Serine Gene Family AT4G34980 44.949 7.54e-106 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242073g00004 - - aip:107623714 718.768