Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242071g00003 ATGGAATTCCAAAGTGGAGAGCAAGCTAATAACAAACTGCTGAAAGCTCAATGCCACATATGGAATCATCTGTATAGTTTTGTAAACTCTGTATCCCTTAAATGTGCTATTGACTTAGATATTCTTGAAACCATACACAAACATGGCAAGCCTATATCACTCTCACAACTCATTTCTTCATTGCAAATTCACCCTTCAAAAACCACCTTCATCCATCGCTTGATTAGAATCTTGACACATTCCGGCTTCGTCGCGACGAAGAATGCGGCCGATCGCGATAATAACAATGAGATCGAAATCGGGTATGTTCTGACCGATTCGTCTATGTTGTTACTTAAGGAACACCCCTTAGGTATAAGGTCTTTCTTTGTTAACTCGCTTGATCCAATTTTGACAAATCCATGGCATAAGTTGTCAACATGGTACAAAAATGATGATCCTACACCGTTTGAAACTGAACATGGGATAAAGATTTGGGAGTATGGTGGCCGTGAACCTAGACTCAATCATTTGCTCAATGAAATGATGGCAAGTGATGCTAGATTCATTAGCAAAATGGTGATTGAGAACTGCAAAGGTGTGTTTGAAGGTTTGGAATCATTGGTTGATGTTGGTGGAGGAAATGGAACTCTTGCAAAGGCCATTTCCAAATCATTTCCAAAGTTGGAGTGCACTGTTCTTGATCTTCCACATGTTGTTGCTGACTTGCAAGGGAGTGACAACCTTAAATATGTTGGAGGGAACATGTTTGAGGCCATTCCTCCTGCAGATGCCATTGTATTGAAGGGGATTTTGCATGATTGGGACGACAAAGAATGCATTGAAATATTGAAGAAAAGCAAGGATGCAATTATGAGCAAAGGCAAGGATGGGAAATTGATCATCATAGAAATGGTGATTGATGAGGGTGAGAATGAAGATCCTGAATTATTTGAAACACAGCTCTTCTTTGATTTGCTGATGATGGTGATGGCTGCTGGAAAAGAGAGAACTGAAAAAGAGTGGGCCAAGTTGTTCTTCTCTGCTGGTTTCAGCGATTATAAAATAATTTCAATTTTAGGTATGAGGTCTGTTATTGAGGTCTATCCATAA 1092 0.3965 MEFQSGEQANNKLLKAQCHIWNHLYSFVNSVSLKCAIDLDILETIHKHGKPISLSQLISSLQIHPSKTTFIHRLIRILTHSGFVATKNAADRDNNNEIEIGYVLTDSSMLLLKEHPLGIRSFFVNSLDPILTNPWHKLSTWYKNDDPTPFETEHGIKIWEYGGREPRLNHLLNEMMASDARFISKMVIENCKGVFEGLESLVDVGGGNGTLAKAISKSFPKLECTVLDLPHVVADLQGSDNLKYVGGNMFEAIPPADAIVLKGILHDWDDKECIEILKKSKDAIMSKGKDGKLIIIEMVIDEGENEDPELFETQLFFDLLMMVMAAGKERTEKEWAKLFFSAGFSDYKIISILGMRSVIEVYP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242071g00003 363 Gene3D Vaccinia Virus protein VP39 113 363 IPR029063 -
Stsc242071g00003 363 Pfam Dimerisation domain 32 79 IPR012967 GO:0046983
Stsc242071g00003 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 362 IPR029063 -
Stsc242071g00003 363 FunFam Coniferyl alcohol 9-O-methyltransferase 4 111 - -
Stsc242071g00003 363 FunFam O-methyltransferase ZRP4 113 363 - -
Stsc242071g00003 363 Pfam O-methyltransferase domain 135 345 IPR001077 GO:0008171
Stsc242071g00003 363 SUPERFAMILY "Winged helix" DNA-binding domain 10 116 IPR036390 -
Stsc242071g00003 363 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 363 IPR016461 GO:0008168
Stsc242071g00003 363 PANTHER O-METHYLTRANSFERASE 14 348 IPR016461 GO:0008168
Stsc242071g00003 363 PIRSF O-mtase 1 363 IPR016461 GO:0008168
Stsc242071g00003 363 Gene3D - 6 111 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242071g00003 Stsc-Chr242071 35856 40183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242071g00003 31 350 Monolignol Biosynthesis Gene Families AT5G54160 33.951 3.70e-52 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242071g00003 - - aip:107606886 641.728