Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242069g00003 ATGGCTCCAAGAAGCAGACAACAAAAAGTAGTGCAAATGGTGGAACCTGTAGAAGAAGAAGATAATGTTGGTGGTGAAGAACTTGATGATGATTTGAAGAAGAATGTTGTGAGAGCCTTGCCATTTTTCAAACTATTGAGCTATGCTGATGTAATAGATTGGATTCTGATGGGTTTGGGAATGGTGGGTTCCATTGTGCATGGAATGGCTCTTCCTGTTGGGTACCTCTTGTTAGGAAAAGCTCTTAATGCTTTTGGGAACAATATTAATGACCAAGATGCCATGGTTAAAGCTCTTAAAAAGGTTGTTCCGTACGTGTGGTACATGGCCATCGCCACATTTCCTGCTGGGATACTTGAGATTGGATGCTGGATGTATACAAGCGAAAGGCAGCTATCACGCTTAAGAATAGCATATCTAAAAGCAGTTCTTAGCCAAGAAATAGGTGCATTTGATACAGAGCTAACAAGTGGAAAAGTCATTAGTGGAATAAGCAAACATATGAGTGTCATACAAGACGCCATTGGTGAGAAGTTGGGTCACTTTACCTCAAGCTGTTCCACATTCTTTGCGGGAGTTGTGATTGCTGCCATATGCTGCTGGGAAGTGGCACTCTTGTGTTTAGTGGTTGTACCGCTTATTCTTTTGATTGGGGCAACTTACACCAAGAAAATGAACACCATTTCAACCACCAAAATGCTTTTCCATTCTGAAGCTACAGCAATGATAGAGCAGACAATATCACACATAAAAACAGTATATGCTTTTGTTGGGGAGAGTTCTGCAGTCAAATCTTTCACAGAGAATATGGACGAACAATTCCAAATAAGCAAAGGGGAGGCACTTGTGAAGGGAGTTGGAACAGGGATGTTCCAAACCGTAAGTTTTTGCTCCTGGGCTCTCATTGTATGGGTTGGAGCCGTCGTGGTCACGGCTGGCAGAGCAAAAGGAGGAGACATTATAGCCGCCGTGATGAGCATCCTCTTTGGTGCTATATCCATCACTTATGCAGCACCAGATATGCAAATATTCAACCAGGCAAAAGCAGCAGGATATGAAGTTTTCCAAGTGATACTAAGAAAGCCTTTAATAAGCAATGAACCACAAGGGAGCAAGGTTACTAGTATCAAAGGTGACATTGAGCTCAGGGATGTCTACTTTACCTACCCATCACGGCCGGAGAAGCCTATCCTTCAAGGACTATCCTTGTCAATTCCAGCAGGAAGGACAGTTGCTCTAGTTGGAAGCAGTGGTTGCGGAAAAAGCACCGTTATTTCCCTGGTTAACAGATTCTATGACCCTGCTAGAGGAGAAGTTCTTATTGATGGTCGCAACATCAAGGATCTTGATCTGAAGTTCCTTCGGAGTAATATAGGGCTCGTTTCCCAAGAACCATCACTGTTTGCAGGCACCATCAAGGATAACTTGAAGGTTGGGAAAATGGATGCAGATGATGAAGATATACAGAAGGCAGCTGTAATGTCAAATGCACACAATTTTGTATCACAACTGCCTACTCAGTACTTAACAGAGGTAGGACAAAGGGGAGTCCAATTATCAGGAGGCCAGAAACAGAGAATTGCAATAGCAAGAGCAATTCTTAAGAATCCTCCCATCCTTTTGCTTGATGAGGCAACTAGCGCCCTCGACACCGAGTCGGAAAAGCTGGTTCAAGAAGCACTTGAAACAGCCATGCAGGGAAGGACTGTCATCTTGATTGCACACAGACTCTCAACTGTTGTAAATGCAGATATGATTGCTGTAGTGGAAAAGGGTCAAGTTGTAGAAACAGGCACACACCAAGATTTGCTTGACAAAAGCGATTTCTATAGGGAATTATATAGCATGCAGAACCTTGAAGCAGCTCCTGAATCCAGCACCACAATTTCTAAAAGTAAAAGTACCCACCAAGGAGATTCTAATGATCAAGCTAAACTGTCAGAAAAGCAGAAAGAGGCTCAAATAAATCCCATGGAGGATTCTGTGCTAAAGGGACAGGAGACAAGAAAAAGAAATGTATTTTTCAGAATCTGGTTCGGTCTAAAACCGAGGGAGCTGGCAAAGATTGCTATTGGCTCAGCTGCAGCAGCATTCTCTGGTGTCTCAAAGCCAGTTTTTGGATACTTCATCATCACCATTGGAGTTGCATACTTCGAACACGACTCAAAAAGGAAGGTTGGCTATTATTCAGCCTTGTTCTCTGCAATAGGATTGCTTTCATTATTCAGTAACACAATCCAGCATTACTTCTATGGAGTGGTTGGAGAAAAGGCCATGGCAAATTTCAGACGTGCTCTATATAAAGGTGTGCTCCGAAACGAAGTAGGCTGGTTTGATAAATCTGAAAACACCGTTGGTTCATTAACTTCGCGCATCATCAGTGACACTTCCCTGGTCAAAATCATAATTGCGGATCGCATGGCTGTGATTGTTCAATGCATTTCCTCCATATTGATAGCAACAATTGTCAGCATGATTGTTAACTGGAGAATGGGTTTGGTAGCTTGGGCTGTGATGCCTTGCCACTTCATAGGAGGTCTCATTCAGGCAAAGTCTGCCAAAGGCTTTTCCGGTGACTATGCCGCTTCACATTCCGAGCTTGTTGCTCTTGCATCTGAGTCTGCATCTAACATAAGGACTATAGCATCATTCTGTCATGAAGATCATGTAATCATGAAAGCAAAGACATCTCAGGAAATTCCAATGAGAAAGTACAGGAATGAAAGCATCAAATATGGTATAGTTCAAGGCTTCTCCCTTTGCTTGTGGAACATTGCACATGCTGTAGCTTTGTGGTATACAACCATTCTGGTTGAAAGACATCAAGCCAGCTTTAAAAATGGAATTAGAGCATACCAAATTTTTTCTCTCACAGTTCCATCTATCACAGAGTTATATACACTGATCCCAACTGTCATCTCTGCTATCAAGGTACTGACACCAGCATTCGAAACTCTTGATCGTAAGACAGAAATCGAACCAGATACACAGGATGATTCCCAACCAGAGAGGATCATAGGAGAAGTTGAATTTGAAAATGTAAAATTCAACTACCCTTCAAGACCTGCAGTCACAGTTCTGAACAAGTTCAGTTTACAAATTGAAGCTGGATCAAAAGTGGCTTTTGTAGGACCAAGTGGTGCAGGGAAATCCTCTGTTTTGGCCCTTATACTAAGGTTTTATGATCCTGGGGTAGGAAAGGTATTAATTGATGGGAGAGATATACGAGAATATAATCTAAGATGGCTAAGGGCTCAAATAGGGCTAGTGCAACAAGAACCACTTCTTTTTAACTGCTCTATAAGAGACAACATTTGCTATGGCCATAATGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCTAGAGAAGCAAACATACATGAATTTGTAAGTAATCTACCAGAGGGATATAACACTGTTGTTGGGGAGAAAGGATGCCAGCTTTCAGGAGGACAGAAGCAAAGAATAGCCATTGCCAGAACCTTACTAAAGAAGCCTGCAATATTACTCCTTGATGAAGCAACAAGTGCTCTTGATGCTGAGTCGGAAAGAACTATTGTGAGCGCTTTAAAAGCAATAAATGTCAAGGAGGAGAGTGGCTTGTGTTCAAAGACTACCCGGATTACGGTCGCTCACAGGCTTTCCACAGTAATAAATTCAGATATCATAGTTGTCATGGACAAGGGTAAGATTGTAGAGATGGGATCGCACTCAACCCTAATAACAAATGGGGAAGGACTCTATTCAAGGTTATTCAAGCTACAGAGCTTCCACGAATCCTCATAA 3786 0.4226 MAPRSRQQKVVQMVEPVEEEDNVGGEELDDDLKKNVVRALPFFKLLSYADVIDWILMGLGMVGSIVHGMALPVGYLLLGKALNAFGNNINDQDAMVKALKKVVPYVWYMAIATFPAGILEIGCWMYTSERQLSRLRIAYLKAVLSQEIGAFDTELTSGKVISGISKHMSVIQDAIGEKLGHFTSSCSTFFAGVVIAAICCWEVALLCLVVVPLILLIGATYTKKMNTISTTKMLFHSEATAMIEQTISHIKTVYAFVGESSAVKSFTENMDEQFQISKGEALVKGVGTGMFQTVSFCSWALIVWVGAVVVTAGRAKGGDIIAAVMSILFGAISITYAAPDMQIFNQAKAAGYEVFQVILRKPLISNEPQGSKVTSIKGDIELRDVYFTYPSRPEKPILQGLSLSIPAGRTVALVGSSGCGKSTVISLVNRFYDPARGEVLIDGRNIKDLDLKFLRSNIGLVSQEPSLFAGTIKDNLKVGKMDADDEDIQKAAVMSNAHNFVSQLPTQYLTEVGQRGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDTESEKLVQEALETAMQGRTVILIAHRLSTVVNADMIAVVEKGQVVETGTHQDLLDKSDFYRELYSMQNLEAAPESSTTISKSKSTHQGDSNDQAKLSEKQKEAQINPMEDSVLKGQETRKRNVFFRIWFGLKPRELAKIAIGSAAAAFSGVSKPVFGYFIITIGVAYFEHDSKRKVGYYSALFSAIGLLSLFSNTIQHYFYGVVGEKAMANFRRALYKGVLRNEVGWFDKSENTVGSLTSRIISDTSLVKIIIADRMAVIVQCISSILIATIVSMIVNWRMGLVAWAVMPCHFIGGLIQAKSAKGFSGDYAASHSELVALASESASNIRTIASFCHEDHVIMKAKTSQEIPMRKYRNESIKYGIVQGFSLCLWNIAHAVALWYTTILVERHQASFKNGIRAYQIFSLTVPSITELYTLIPTVISAIKVLTPAFETLDRKTEIEPDTQDDSQPERIIGEVEFENVKFNYPSRPAVTVLNKFSLQIEAGSKVAFVGPSGAGKSSVLALILRFYDPGVGKVLIDGRDIREYNLRWLRAQIGLVQQEPLLFNCSIRDNICYGHNGASESEIVEVAREANIHEFVSNLPEGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERTIVSALKAINVKEESGLCSKTTRITVAHRLSTVINSDIIVVMDKGKIVEMGSHSTLITNGEGLYSRLFKLQSFHESS 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242069g00003 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 690 974 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc242069g00003 1261 SUPERFAMILY ABC transporter transmembrane region 45 350 IPR036640 GO:0005524|GO:0016020
Stsc242069g00003 1261 CDD ABC_MTABC3_MDL1_MDL2 380 617 - -
Stsc242069g00003 1261 CDD ABC_MTABC3_MDL1_MDL2 1009 1255 - -
Stsc242069g00003 1261 SMART AAA_5 407 599 IPR003593 GO:0016887
Stsc242069g00003 1261 SMART AAA_5 1036 1230 IPR003593 GO:0016887
Stsc242069g00003 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1253 IPR003439 GO:0005524
Stsc242069g00003 1261 Pfam ABC transporter 398 547 IPR003439 GO:0005524
Stsc242069g00003 1261 MobiDBLite consensus disorder prediction 621 641 - -
Stsc242069g00003 1261 CDD ABC_6TM_Pgp_ABCB1_D1_like 57 354 - -
Stsc242069g00003 1261 SUPERFAMILY ABC transporter transmembrane region 677 994 IPR036640 GO:0005524|GO:0016020
Stsc242069g00003 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 59 346 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc242069g00003 1261 ProSitePatterns ABC transporters family signature. 1148 1162 IPR017871 GO:0005524|GO:0016887
Stsc242069g00003 1261 CDD ABC_6TM_Pgp_ABCB1_D2_like 684 992 - -
Stsc242069g00003 1261 FunFam ABC transporter B family member 1 999 1256 - -
Stsc242069g00003 1261 MobiDBLite consensus disorder prediction 621 662 - -
Stsc242069g00003 1261 Gene3D - 370 618 IPR027417 -
Stsc242069g00003 1261 PANTHER ABC TRANSPORTER B FAMILY 32 743 IPR039421 -
Stsc242069g00003 1261 FunFam ABC transporter B family member 4 370 625 - -
Stsc242069g00003 1261 Pfam ABC transporter 1027 1176 IPR003439 GO:0005524
Stsc242069g00003 1261 Pfam ABC transporter transmembrane region 58 331 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc242069g00003 1261 Pfam ABC transporter transmembrane region 692 948 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc242069g00003 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 617 IPR027417 -
Stsc242069g00003 1261 Gene3D - 999 1260 IPR027417 -
Stsc242069g00003 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1002 1255 IPR027417 -
Stsc242069g00003 1261 ProSitePatterns ABC transporters family signature. 519 533 IPR017871 GO:0005524|GO:0016887
Stsc242069g00003 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 616 IPR003439 GO:0005524
Stsc242069g00003 1261 Gene3D ABC transporter type 1, transmembrane domain 44 961 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242069g00003 Stsc-Chr242069 9894 18336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242069g00003 674 1261 Calmodulin-binding Proteins AT2G36910 34.725 1.10e-92 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242069g00003 K05658 - qsa:O6P43_014878 1876.68