Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242063g00005 ATGATGAAGATGGTGGAAGAAGAAAGCCATGGATCAGAATGTTTCAAGACAAGAAGCCCTTATAATGATAATAACGATAATGAAGATGATGGTTATTGTGAAGAAGAGAGCGAGGCCAACAATGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGAATGGTGGTGGAGGAGGGAGTTCAAGCAACAGCACAGTGGAAGAGAACAACGAGAAGAAGAGTTCATCAACATCAGTAAGACCATACATTAGATCCAAGTTGCCAAGGTTGCGTTGGACCCCTGATCTTCATCTGAGATTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACACCAAAACTGGTTCTTCAGTTGATGAATATCAAAGGTTTAAGTATTGCTCATGTCAAGAGTCATTTACAGATGTACAGGAGCAAGAAGGTGGAGGACACAAATCATCAAGTAGTAATGGGTGATCATCATAGGCTTCTAATAGAAAATGGAGAGAGAAATAATGTTTATAATCTCACCCAGCAGCTTCCCATGCTTCAAGGCTATAGATATGGTTATGGATATGGAATTGCTTCTCTTGGTGTGTATGAAAACATGGTGCATAGGCCTAATTTGATAGCTGAAAGAATCTATAATGGTAATGTGACTAACAATAATAACATTAACACCAATTGGACTCATCACCATAGCATTTTCCAAGTGGATTCTTCTCATAACTTTGTTGATTCAACAAGCCATCCTCCTCCTCATCATCAGTTTCTATCACTTGGTAATGGCCAAGAATCTTTAATGAGCAGTCAGATTGAAAAGCCTAGAGCTCAAGATTTCTTCATGATGCCTAATGCTAATAATAATTTGAAAAGGAAGGCTTCAGTAGCAAATAATAGTAATATTGATTTGGACTTGTCTCTTAAATTAAAAACTTCAAGGTTTGTTTCTGATGATGAGGAGCAATTAGGAAGAAGCAGCAGCATGATAATGACGACTATGGAGGAAGAACACCATGAAGGAGTAGTTGATAGCAATCTATCACTCTCTTTGCACTCTCATCAACAGGATCACTGTAATAATAAGGTGAAAGGGAAAAAGGGCACTACTAATTTGGATCTAAGAATCTGA 1113 0.381 MMKMVEEESHGSECFKTRSPYNDNNDNEDDGYCEEESEANNEEEEEEEEEKNGGGGGSSSNSTVEENNEKKSSSTSVRPYIRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVEDTNHQVVMGDHHRLLIENGERNNVYNLTQQLPMLQGYRYGYGYGIASLGVYENMVHRPNLIAERIYNGNVTNNNNINTNWTHHHSIFQVDSSHNFVDSTSHPPPHHQFLSLGNGQESLMSSQIEKPRAQDFFMMPNANNNLKRKASVANNSNIDLDLSLKLKTSRFVSDDEEQLGRSSSMIMTTMEEEHHEGVVDSNLSLSLHSHQQDHCNNKVKGKKGTTNLDLRI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242063g00005 370 MobiDBLite consensus disorder prediction 351 370 - -
Stsc242063g00005 370 MobiDBLite consensus disorder prediction 54 78 - -
Stsc242063g00005 370 Coils Coil 33 53 - -
Stsc242063g00005 370 SUPERFAMILY Homeodomain-like 85 140 IPR009057 -
Stsc242063g00005 370 MobiDBLite consensus disorder prediction 27 51 - -
Stsc242063g00005 370 NCBIfam myb-like DNA-binding domain, SHAQKYF class 86 141 IPR006447 GO:0003677
Stsc242063g00005 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 142 IPR017930 -
Stsc242063g00005 370 MobiDBLite consensus disorder prediction 1 78 - -
Stsc242063g00005 370 Gene3D - 85 142 - -
Stsc242063g00005 370 Pfam Myb-like DNA-binding domain 88 138 IPR001005 -
Stsc242063g00005 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 63 222 IPR046955 GO:0003700
Stsc242063g00005 370 MobiDBLite consensus disorder prediction 349 370 - -
Stsc242063g00005 370 FunFam Myb family transcription factor 84 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242063g00005 Stsc-Chr242063 33147 34954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242063g00005 63 147 G2-like Transcription Factor Family AT2G42660 69.565 2.36e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc242063g00005 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242063g00005 - - adu:107484994 423.32