Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242063g00002 ATGGCTAGCGCATACGAAGAGCACCTTCCGGCATCACCGGAATGGCTAAACAACGGTGACAACGCATGGCAGATGACGGCGGCGACACTCGTCGGCCTCCAAAGCATGCCGGGACTCGTTATACTCTATGCAAGCATAGTCAAGAAGAAATGGGCCGTCAATTCCGCTTTCATGGCTCTCTATGCTTTCGCGGCGGTTCTAATTTGTTGGGTCCTTCTCTGTTACCGCATGGCCTTCGGTGAGGAGCTTCTTCCATTTTGGGGGAGAGGAGGACCAGCACTAGGCCAAAAGTACCTAATCAAACAAGCCAAGGTTCCTGAAACCGCTCATTATTACAAAAATGGGCATCTTGAGAAGCCTATGGAGAGACCCTTTTTTCCTATGGCTTCCCTTGTGTATTTTCAGTTCCAATTTGCAGCAATTACGATGATCTTGCTGGCTGGTTCTGTTCTTGGGCGCATGAACATCAAGGCTTGGATGGCTTTTGTGCCTCTTTGGCTCATATTTTCTTACACTGTTGGTGCTTTCAGCCTCTGGGGTGGTGGCTTTCTTTACCACTGGGGTGTTATTGATTACTCTGGCGGCTATGTTATTCATCTTTCCTCCGGAATTGCTGGATTCGCTGCTGCTTATTGGGTTGGGCCAAGGGTGAAGAGTGATAGGGAAAGGTTCCCGCCAAACAACGTGCTACTGATGCTCGCGGGAGCAGGGTTGCTATGGATGGGGTGGTCAGGGTTCAATGGGGGAGCACCGTACGCCGCGAATACAACGTCGTCGATTGCTGTGTTGAACACAAACATATGTGCGGCCACCAGCCTCCTTGTGTGGACGTCTCTTGATGTTGTTTTCTTTGGGAAGCCCTCTGTCATCGGAGCCGTTCAGGGTATGATGACTGGCCTTGTCTGCATCACCCCGGCTGCTGGGCTTGTGCAATCGTGGGCGGCCATAGTGATGGGAATCCTATCTGGAAGCATTCCGTGGGTCTCAATGATGATTCTTCACAAAAAGTCAAGCCTCCTTCAGAAGGTAGATGACACCCTAGGTGTATTTCACACACACGCAGTAGCTGGCCTATTGGGTGGGCTCCTCACAGGTCTCCTCGCAGAACCAACGCTTTGCAACCAGCTATTACCGGTAACCAATTCAAGAGGTGCATTCTATGGTGGTAGTGGTGGGGTTCAGTTCCTAAAACAAATTGTTGCAGCATTGTTCATAATTGGTTGGAACTTGGTCTCAACAACCATAATTCTTCTTGTGATTCGATTGTTCATACCTTTGAGGATGCCTGAGGAGCAGCTTGAGATTGGTGACGATGCTGTTCATGGTGAAGAAGCTTATGCACTTTGGGGTGATGGTGAAAAATATGATCCAACAAGGCATGGGACACAACATCATCATAATGGCAACTCTGCTGTTTCACCTTATGTAAGTGGTGCAAGAGGTGTCACCATCAATTTGTGA 1461 0.4921 MASAYEEHLPASPEWLNNGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLLCYRMAFGEELLPFWGRGGPALGQKYLIKQAKVPETAHYYKNGHLEKPMERPFFPMASLVYFQFQFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGFAAAYWVGPRVKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANTTSSIAVLNTNICAATSLLVWTSLDVVFFGKPSVIGAVQGMMTGLVCITPAAGLVQSWAAIVMGILSGSIPWVSMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPTLCNQLLPVTNSRGAFYGGSGGVQFLKQIVAALFIIGWNLVSTTIILLVIRLFIPLRMPEEQLEIGDDAVHGEEAYALWGDGEKYDPTRHGTQHHHNGNSAVSPYVSGARGVTINL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242063g00002 486 SUPERFAMILY Ammonium transporter 15 428 - -
Stsc242063g00002 486 Gene3D Ammonium transporter AmtB like domains 2 449 IPR029020 -
Stsc242063g00002 486 PANTHER AMMONIUM TRANSPORTER MEP2 7 457 IPR001905 GO:0008519|GO:0016020|GO:0072488
Stsc242063g00002 486 MobiDBLite consensus disorder prediction 457 476 - -
Stsc242063g00002 486 FunFam Ammonium transporter 4 449 - -
Stsc242063g00002 486 Pfam Ammonium Transporter Family 22 446 IPR024041 GO:0008519|GO:0016020|GO:0072488
Stsc242063g00002 486 ProSitePatterns Ammonium transporters signature. 191 216 IPR018047 GO:0008519|GO:0016020|GO:0072488
Stsc242063g00002 486 NCBIfam ammonium transporter 20 446 IPR001905 GO:0008519|GO:0016020|GO:0072488
Stsc242063g00002 486 PRINTS Rhesus blood group protein signature 316 334 IPR002229 GO:0005886
Stsc242063g00002 486 PRINTS Rhesus blood group protein signature 354 370 IPR002229 GO:0005886
Stsc242063g00002 486 PRINTS Rhesus blood group protein signature 135 151 IPR002229 GO:0005886
Stsc242063g00002 486 PRINTS Rhesus blood group protein signature 230 248 IPR002229 GO:0005886
Stsc242063g00002 486 PRINTS Rhesus blood group protein signature 261 283 IPR002229 GO:0005886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242063g00002 Stsc-Chr242063 16382 20686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242063g00002 128 486 Inorganic Solute Cotransporters AT2G38290 77.994 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242063g00002 K03320 - gmx:100790119 865.529