Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242062g00006 ATGGCGAACAGAGCTCAAATTCCTACAAAAAGTTCAGCTCTTATTGCCATGATTGCAGATGAGGATACTGTCGTTGGATTTTTGTTGGCTGGAGTGGGAAATGTTGACATCCGTAGAAAGACAAATTATCTCATTGTGGATTCAAAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTCACAACAAGGGAGGATATTGCAATTGTGCTGATTAGCCAATATGTTGCAAATATGATAAGGTTTCTGGTTGATAGTTACAATAAGCCTGTTCCTGCGATTCTTGAAATCCCTTCCAAAGACCATCCTTATGATCCTGCACATGATTCAGTTCTTTCCCGAGTCAAGTATCTCTTTTCTACCGAATCAGTGGCATCCGGGAGACGCTAA 393 0.3995 MANRAQIPTKSSALIAMIADEDTVVGFLLAGVGNVDIRRKTNYLIVDSKTTVKQIEDAFKEFTTREDIAIVLISQYVANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSTESVASGRR 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242062g00006 130 PIRSF V-ATP_synth_F 3 123 IPR005772 GO:0033180|GO:0046961|GO:1902600
Stsc242062g00006 130 NCBIfam V-type ATPase subunit F 12 124 IPR005772 GO:0033180|GO:0046961|GO:1902600
Stsc242062g00006 130 Pfam ATP synthase (F/14-kDa) subunit 15 116 IPR008218 GO:0034220|GO:0046961
Stsc242062g00006 130 SUPERFAMILY AtpF-like 15 99 IPR036906 GO:0034220
Stsc242062g00006 130 Gene3D ATPase, V1 complex, subunit F 9 122 IPR036906 GO:0034220
Stsc242062g00006 130 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT F 1 126 - -
Stsc242062g00006 130 FunFam V-type proton ATPase subunit F 9 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242062g00006 Stsc-Chr242062 34767 37903 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242062g00006 1 126 Primary Pumps ATPases(2) AT4G02620 88.095 7.24e-82 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242062g00006 K02151 - gmx:100780523 246.899