Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242061g00007 ATGGAGATTGTCAAATTCCTGTACTTGAACCTTGTTGCCACTTTCACATTCTCACTGGTTTTAGCAATCGACCCTTATTCAGAGGCACTACTGAGCCTGAAATCCGATCTTGTAGATGATGGTAACACGTTGCATGATTGGAAAGTACCTTCTCAACAAGGGAACTCATCAAACTCAACAGCACAAGAATCCTATGCATGTTCTTGGACAGGTATCAAGTGTAACAAGGACTCAACAGTTGTGACCTCCATAGACCTCTCAATGAAGAAACTCGGTGGCGTAATCTCGGGGAAGCAATTCAACATCTTCACAAACCTTGTTGATCTCAACCTCAGCTACAACTTCATCTCTGGCCAGCTTCCGGTGGAAATTTTCAACCTCACAAGCCTGAAAAGCCTTGATATCAGCAGAAACAATTTCTCTGGTAAATTTCCAGGTGGAATTTCCAGCCTCCAAAATCTTCTTGTACTTGATGCCTTTAGCAACAGCTTTTCAGGTCCATTGCCTGCTGAACTTTGGCTGCTGCCGAATCTCAAGGTTCTTAATCTAGCTGGGAGTTACTTCAGTGGACCAATTCCATCTGAATATGGTTCTTTCACCAGCCTTGAGTTTCTTCATCTTGCAGGGAATTCTCTCTCAGGGAAAATTCCTTCAGAACTTGGTAACCTCAAAACAGTGACCCATATGGAGATCGGTTACAACATCTATGACGGTTTTATTCCGCCTCAATTGGGTAACATGAGCCAGATTCAGTATCTTGACATAGCAGGTGCAAATCTATCAGGCCCCATACCGAAGCAACTCTCCAACCTTACCAGTTTGCAGTCACTTTTCCTGTTCCGAAACCAGCTCACCGGATCAATACCAAGTGAGTTCAGCAGTATCAAAACTCTGACAAATTTAGATTTGTCTGATAACTACCTTTCAGGGTCAATTCCAGAGAGCTTTTCAGAGTTAAAGAACCTAAGACTGCTGAGTCTCATGTACAATGAAATGACGGGGACTGTTCCCGAAGGCATCGGTGGACTCCCGTCGTTGGAAACCCTCCTCATTTGGAACAACCACTTCTCTGGATCGCTTCCACAGAGCCTGGGAAGCAACTCCAAACTGAAGTGGGTGGATGCGTCCACAAACTATTTGGTTGGCAGCATTCCACCGGACATTTGTGCAAGTGGAGAACTGTATAAGTTGATCTTGTTCTCAAACAAATTCACAGGTGGAATCTCCCCTCTCTCCGATTGTTCTTCCATTGTTCGCCTTCGTCTTGAAGATAACTCATTCTCAGGAAGGATCCCTCTGAGATTCAGCCATCTTCCTGATATTTCATACGTTGACCTGTCCCAGAACAATTTTGTTGGTGGCATTCCCTCGGATATTTCTCAGGCATATCAACTTCGGTATTTCAATGTCTCTCATAATCCACGATTAGGAGGCACCATCCCAGAAGGAATATGGTCTTTGCCCATACTTCAAAACTTCTCATCATCGTCTTGCGGTATTTCAGGTGATCTTCCTCAGTTTGAGTCCTGCAAATCAATTTCAGTTATTGATCTAGATAGGAACAACTTATCTGGAACTATACCAAACAGTTTTGCCAAATGCCAGGATCTTGAAAAAATGAACTTGTCAAACAACAATATGACAGGTCATATACCTGAAGAACTTGCTAGCATCCCTGTTCTTAGTGTCATAGACCTATCAAATAATAAGCTCAATGGCCCCATACCTGAAAAGTTTGGTAGTTCTTCAAGTTTACAACTTCTCAATGTGTCCTTCAACAACATCACGGGTTCAATTCCAGCAGGGAGGTCATTCAAATTGATGGCTAGCAGTGCATTTGTTGGGAACTCTGAGCTCTGTGGAGCACCTCTTAAACCATGTCCAGATTCGATTGGAATATTGGGGAGCAAAGGCACATGGAGGCTTACCCGTATTCTGCTACTCTGTTTAGGGTTATTAGTAATCCTTCTAGGAGTCGGATTTGGAATACTTTATTTAAGAAGAGGGATCAGAAGTCAATGGAAGATGGTCTCATTTGCTGGACTCCCACAATTCACAGCAAATGATGTTTTGACAAGCTTCAGTGACACAAAAACAACAGCAGAAGTTCCATCACCATCACCACCTTTGGTTTCGAAGGCGGTTCTCCCTACAGGGATAACAGTCGTAGTTAAGAAGATTGAATGGGAACAGAGGAGCATCAAGGTCATGTCAGAATTCATAATTCGCCTTGGAAATGCAAGGCACAAGAACTTGATCAGATTGTTGGGGTTATGCCACAACAATCAGTTAGTCTATCTTCTGTATGATTGTGTGCCCAATGGGAATTTGGCTGAAAGAATTGGAAGGAAATGGGACTGGGAAGCTAAGTTCAGAACTGTGGTTGGAATCGCAAGCGGGCTAAGATTCCTTCACCATGACTGTTACCCAGCCATACCCCATGGAGACTTGAGATCAAGCAACATTGTCTTTGATGAAAATATGGAACCCCGTTTGGCTGAATTTGGGTTCAAACATCTGTTAAAGTTGACCAAAGGTTCATCTCCTGCCACAACCAAGTGGGAAACAGGATACAATGAAGCCTTGAAAGAAGAACTCACAATGGATGTCTTCAAATTTGGAGAGATGATTCTGGAAATTTTAACTGGAGGAAGGTTGACTAATGCATCAGCTACTATACAAAACAAACCAAGGAATGTTCTTCTGAGAGAAATTTATGACGAGAACGAAGTCAGTTCTCCAAGTTCAATGCAGGAGATCAAACTGGTTTTCGAGGTTGCTATGCTTTGCACAAGCAGCATGTCAAACGATCAACCATCCATGGAAGATGCTCTGAAGCTTTTGTCAGGGATCAAACCTATAGAAGATGGCAGAGCTTCAAAAGAAGGATAG 2892 0.4298 MEIVKFLYLNLVATFTFSLVLAIDPYSEALLSLKSDLVDDGNTLHDWKVPSQQGNSSNSTAQESYACSWTGIKCNKDSTVVTSIDLSMKKLGGVISGKQFNIFTNLVDLNLSYNFISGQLPVEIFNLTSLKSLDISRNNFSGKFPGGISSLQNLLVLDAFSNSFSGPLPAELWLLPNLKVLNLAGSYFSGPIPSEYGSFTSLEFLHLAGNSLSGKIPSELGNLKTVTHMEIGYNIYDGFIPPQLGNMSQIQYLDIAGANLSGPIPKQLSNLTSLQSLFLFRNQLTGSIPSEFSSIKTLTNLDLSDNYLSGSIPESFSELKNLRLLSLMYNEMTGTVPEGIGGLPSLETLLIWNNHFSGSLPQSLGSNSKLKWVDASTNYLVGSIPPDICASGELYKLILFSNKFTGGISPLSDCSSIVRLRLEDNSFSGRIPLRFSHLPDISYVDLSQNNFVGGIPSDISQAYQLRYFNVSHNPRLGGTIPEGIWSLPILQNFSSSSCGISGDLPQFESCKSISVIDLDRNNLSGTIPNSFAKCQDLEKMNLSNNNMTGHIPEELASIPVLSVIDLSNNKLNGPIPEKFGSSSSLQLLNVSFNNITGSIPAGRSFKLMASSAFVGNSELCGAPLKPCPDSIGILGSKGTWRLTRILLLCLGLLVILLGVGFGILYLRRGIRSQWKMVSFAGLPQFTANDVLTSFSDTKTTAEVPSPSPPLVSKAVLPTGITVVVKKIEWEQRSIKVMSEFIIRLGNARHKNLIRLLGLCHNNQLVYLLYDCVPNGNLAERIGRKWDWEAKFRTVVGIASGLRFLHHDCYPAIPHGDLRSSNIVFDENMEPRLAEFGFKHLLKLTKGSSPATTKWETGYNEALKEELTMDVFKFGEMILEILTGGRLTNASATIQNKPRNVLLREIYDENEVSSPSSMQEIKLVFEVAMLCTSSMSNDQPSMEDALKLLSGIKPIEDGRASKEG 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242061g00007 963 PANTHER UNNAMED PRODUCT 177 887 - -
Stsc242061g00007 963 FunFam Leucine-rich repeat receptor-like protein kinase TDR 194 297 - -
Stsc242061g00007 963 SUPERFAMILY L domain-like 48 385 - -
Stsc242061g00007 963 SUPERFAMILY Protein kinase-like (PK-like) 683 948 IPR011009 -
Stsc242061g00007 963 SMART LRR_typ_2 271 294 IPR003591 -
Stsc242061g00007 963 SMART LRR_typ_2 343 367 IPR003591 -
Stsc242061g00007 963 SMART LRR_typ_2 199 223 IPR003591 -
Stsc242061g00007 963 SMART LRR_typ_2 103 127 IPR003591 -
Stsc242061g00007 963 Gene3D Phosphorylase Kinase; domain 1 690 770 - -
Stsc242061g00007 963 Pfam Protein tyrosine and serine/threonine kinase 719 945 IPR001245 GO:0004672|GO:0006468
Stsc242061g00007 963 FunFam Leucine-rich repeat receptor-like protein kinase TDR 772 956 - -
Stsc242061g00007 963 FunFam Leucine-rich repeat receptor-like protein kinase TDR 685 771 - -
Stsc242061g00007 963 Pfam Leucine rich repeat 513 571 IPR001611 GO:0005515
Stsc242061g00007 963 Pfam Leucine rich repeat 297 356 IPR001611 GO:0005515
Stsc242061g00007 963 Pfam Leucine rich repeat N-terminal domain 28 75 IPR013210 -
Stsc242061g00007 963 FunFam Leucine-rich repeat receptor-like protein kinase 23 193 - -
Stsc242061g00007 963 SUPERFAMILY RNI-like 312 600 - -
Stsc242061g00007 963 Gene3D Ribonuclease Inhibitor 192 297 IPR032675 -
Stsc242061g00007 963 FunFam Leucine-rich repeat receptor-like protein kinase TDR 316 629 - -
Stsc242061g00007 963 ProSiteProfiles Protein kinase domain profile. 650 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242061g00007 963 Gene3D Ribonuclease Inhibitor 26 191 IPR032675 -
Stsc242061g00007 963 Gene3D Transferase(Phosphotransferase) domain 1 772 961 - -
Stsc242061g00007 963 Pfam Leucine Rich Repeat 129 151 IPR001611 GO:0005515
Stsc242061g00007 963 Gene3D Ribonuclease Inhibitor 298 631 IPR032675 -
Stsc242061g00007 963 ProSitePatterns Tyrosine protein kinases specific active-site signature. 812 824 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242061g00007 Stsc-Chr242061 30806 34362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242061g00007 2 949 Receptor kinase-like Gene Family AT5G51350 53.702 0.0 965
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc242061g00007 PK_Tyr_Ser-Thr 1.4e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242061g00007 - - aprc:113852384 1494.95