LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc242055g00007	ATGGAGGAATACACTAATAATAGCAACAATAATAATAATAATCAAAGCCCAAGTTCAAGTTCAAGGGCAACTTTCTTGTACTCTTCGCTTCCTGCTTCTTCAACCCTACCTCATCACCTTCCAATTAACACCTTTCATCATCATCATCATCAATCTGCAGATGCTGGATCCGATCACTGCTTTCAATCCCATCAAGTATTACCTTCCGTCAAAACCGAACCCAACAACTCCTCCTCGCAGCAGCTTCACACTACTCATCATCATCAGATTTTCAACTATCCTCTCATGAGTCCCAGCAATCTTCATCAAAACTCCAACGATGATGTTGAAGCCATCAAAGCCAAAATCATCGCCCATCCTCACTACTCTAATCTCTTACAAGCTTACATAGACTGCCAAAAGGTAGGAGCTCCGCCGGAAGTGGTGGCGCGATTAAGCGCCGCTCGGCAGGAATTCGAGGCACGGCAGCGGTGTTTGGTTGGTTCCACCTGCGGCAAGGACCCTGAACTTGACCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTACAGGCAGGAGCTTTCAAGGCCTATACAAGAGGCCATGGACTTCATACGCAGGATTGAGTCTCAGCTTAACATGCTTTCCAATAATGGACCCCTTCGCATCTTCTCTGAGGATAAATGTGAAGGAGTTGGCTCATCAGAAGAGGATCAGCAAGAAAACAGTGGAGGAGAAGAAGAATCAGGAGTAGTGGGGGAGATTGATCCTCGAGCAGAAGACCGTGAACTGAAGAACCACTTGCTTAGAAAGTACAGTGGTTACTTAAGCAGCCTGAAGCAAGAACTGTCCAAGAAGAAGAAGAAAGGAAAACTGCCTAAAGATGCTAGGCAGAAGCTACTCACCTGGTGGGAGTTACATTACAAATGGCCTTATCCTTCTGAATCAGAGAAGGTAGCATTGGCTGAATCAACAGGACTTGACCAGAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAGAGACACTGGAAACCATCTGAAGACATGCAGTTCATGGTCATGGATGGCCTCCATCCACATCATCAAAACTCATCATCTCTCTACATGGATTCTCATCATGCCCATTATATTATGCCTGATGGACATTACCGCTTACCACCATAA	1149	0.4482	MEEYTNNSNNNNNNQSPSSSSRATFLYSSLPASSTLPHHLPINTFHHHHHQSADAGSDHCFQSHQVLPSVKTEPNNSSSQQLHTTHHHQIFNYPLMSPSNLHQNSNDDVEAIKAKIIAHPHYSNLLQAYIDCQKVGAPPEVVARLSAARQEFEARQRCLVGSTCGKDPELDQFMEAYYDMLVKYRQELSRPIQEAMDFIRRIESQLNMLSNNGPLRIFSEDKCEGVGSSEEDQQENSGGEEESGVVGEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPHHQNSSSLYMDSHHAHYIMPDGHYRLPP	382

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc242055g00007	382	Gene3D	-	282	344	-	-
	Stsc242055g00007	382	Pfam	KNOX2 domain	165	209	IPR005541	GO:0003677\|GO:0005634
	Stsc242055g00007	382	Pfam	Homeobox KN domain	297	336	IPR008422	GO:0003677\|GO:0006355
	Stsc242055g00007	382	Pfam	ELK domain	257	278	IPR005539	GO:0003677
	Stsc242055g00007	382	ProSitePatterns	'Homeobox' domain signature.	315	338	IPR017970	GO:0000981\|GO:0006355
	Stsc242055g00007	382	MobiDBLite	consensus disorder prediction	222	251	-	-
	Stsc242055g00007	382	SMART	ELK_2	257	278	IPR005539	GO:0003677
	Stsc242055g00007	382	SMART	ELK_2	169	189	IPR005539	GO:0003677
	Stsc242055g00007	382	Pfam	KNOX1 domain	111	153	IPR005540	GO:0003677\|GO:0005634
	Stsc242055g00007	382	CDD	homeodomain	289	341	IPR001356	GO:0003677
	Stsc242055g00007	382	ProSiteProfiles	'Homeobox' domain profile.	277	340	IPR001356	GO:0003677
	Stsc242055g00007	382	ProSiteProfiles	ELK domain profile.	257	277	IPR005539	GO:0003677
	Stsc242055g00007	382	SMART	HOX_1	279	344	IPR001356	GO:0003677
	Stsc242055g00007	382	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	47	347	-	-
	Stsc242055g00007	382	SMART	KNOX1_2	110	154	IPR005540	GO:0003677\|GO:0005634
	Stsc242055g00007	382	SMART	KNOX2_2	160	211	IPR005541	GO:0003677\|GO:0005634
	Stsc242055g00007	382	MobiDBLite	consensus disorder prediction	1	23	-	-
	Stsc242055g00007	382	FunFam	Homeobox protein knotted-1-like 2	282	344	-	-
	Stsc242055g00007	382	SUPERFAMILY	Homeodomain-like	278	354	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc242055g00007	Stsc-Chr242055	36706	40754	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc242055g00007	108	382	Homeobox Transcription Factor Family	AT4G08150	75.714	6.62e-138	397

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Stsc242055g00007		KNOX2	1.7e-24	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc242055g00007	-		-	gmx:100807602	458.373