Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242055g00006 ATGGGCTTTGATGAAAATATCTCTAATAATAACCAAGATCTTGGACTTGCTCTTGCTCTTGGTCTTGTTCATGGTGATGAAAACTGCAGCTGGCAGAAGAAGAAGGAGGAGGAAGAGGGTCATCCATGCAGCAATGGTAAGGCATACCCATCTCTTACGTTAGGACCACAAGAAGCTTCTGAAAGCGCAGTTTCTTCATTTTCCAACTCATCGTCTGCTAGCATCAAGAGGGAGAGAGATCCAGAATTGATGCCATACTTAGAGGAAGAAAACAAGATGAATAATAATAATAATAATCCATGGAAGGTTATTGATGTTGATGTAGATGATGAGAATCATAATAATTGTAACACCAGAAAGAAACTTAGACTCACCAAACAACAATCTGCACTCTTAGAGGAAAGCTTCAAACACCATTCCACTCTCAATCCGAAGCAAAAGCAAGAGTTGGCAAGGAAACTCAACCTCAGAGCCAGGCAAGTGGAGGTCTGGTTTCAGAACAGGAGAGCAAGGACAAAATTGAAGCAAACGGAAGTGGAGTGTGAGGTATTGAAGAAATGCTGTGAGAGGCTACGAGAAGAGAACAAGAGGCTGCAAAAGGAGCTGCAACATCTCAAATCCATGACCCAAACTGGACCCACCTTGGCGACATGCCCTTCTTCTGAAACCAATAATAATTCATCAAACCTCCATCCTCGCTTCTATAAAACTACCTGCTACCCATTCACCCAATCATCCGCAGCTTGCTAA 750 0.4267 MGFDENISNNNQDLGLALALGLVHGDENCSWQKKKEEEEGHPCSNGKAYPSLTLGPQEASESAVSSFSNSSSASIKRERDPELMPYLEEENKMNNNNNNPWKVIDVDVDDENHNNCNTRKKLRLTKQQSALLEESFKHHSTLNPKQKQELARKLNLRARQVEVWFQNRRARTKLKQTEVECEVLKKCCERLREENKRLQKELQHLKSMTQTGPTLATCPSSETNNNSSNLHPRFYKTTCYPFTQSSAAC 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242055g00006 249 FunFam Homeobox-leucine zipper protein 18 104 180 - -
Stsc242055g00006 249 Pfam Homeobox associated leucine zipper 175 209 IPR003106 GO:0006355|GO:0043565
Stsc242055g00006 249 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 17 229 - -
Stsc242055g00006 249 SMART halz 175 218 IPR003106 GO:0006355|GO:0043565
Stsc242055g00006 249 Coils Coil 174 211 - -
Stsc242055g00006 249 Gene3D - 123 169 - -
Stsc242055g00006 249 SUPERFAMILY Homeodomain-like 110 176 IPR009057 -
Stsc242055g00006 249 SMART HOX_1 117 179 IPR001356 GO:0003677
Stsc242055g00006 249 ProSiteProfiles 'Homeobox' domain profile. 115 175 IPR001356 GO:0003677
Stsc242055g00006 249 ProSitePatterns 'Homeobox' domain signature. 150 173 IPR017970 GO:0000981|GO:0006355
Stsc242055g00006 249 MobiDBLite consensus disorder prediction 55 74 - -
Stsc242055g00006 249 Gene3D - 170 220 - -
Stsc242055g00006 249 Pfam Homeodomain 119 173 IPR001356 GO:0003677
Stsc242055g00006 249 MobiDBLite consensus disorder prediction 32 78 - -
Stsc242055g00006 249 CDD homeodomain 119 176 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242055g00006 Stsc-Chr242055 32460 34131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242055g00006 106 249 Homeobox Transcription Factor Family AT4G37790 56.140 1.67e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc242055g00006 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242055g00006 K09338 - gmx:100797650 185.652