Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242055g00004 ATGGGTAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGGCCATGGTCCCCGGAAGAAGATTCCAAACTCAAATCCTACATCGAACAACACGGCACTGGTGGCAACTGGATTGCTTTGCCCCAAAAGATCGGGCTTAAGAGATGTGGCAAGAGTTGCCGTCTGCGGTGGCTCAACTACCTTCGCCCTAATCTCAAGCACGGTGGTTTCTCCGAAGAAGAAGACAACATCATTTGCAGCCTCTACGTTACTATTGGAAGCAGGTGGTCGGTGATTGCAGCGCAGTTGCCTGGAAGAACAGACAACGACATAAAGAATTATTGGAACACCAAGCTCAAGAAGAAGCTTCTGGGAAAACACCGCACCAATAAAGACCACCACCAAGCACGTTCTAGAAAGCAAGCAATAGCAAATAACAATGGTGGTAGCGGGGATTATTCTTCTTCATCATCATCTACTACTGCTACTCATCATCAACAGCAGCAACCGTATTATTGGTCACACATGCACATGCCTGTGCTGCCACTACCGCCACCGCCGCCACCATTACCACCGTTGCCATACGCAAAAGAAAACAATCAAGGGCCGAGTTTCAACGACCAAGACTCTCTCAGGAAACTTCTTATCAAGCTTGGAGGAAAATTCTCCAACAACAACAACAGTAGTAGTGATCATGATTATCAGCCACCTCTTGAGGATGGGGTAATCATGAATTTTGATCATCAATTCCCTCCTTATTATGAAGAAGAACAAATTCATCATCATCATCATCATCATCATCATATTGCTGGTTCATCATCCAGTTGCATGAACAATAATTCTGCTAGCAACAACAGCAGCAGTGTTGCTGAACAATTCTCACAAAATGATAATAATAACAATAATTTCAACGCAGCAGCAACAAGAGTTGGGGAAATGGTGTCTGCTAACAATTATCCAGAAAGGTTAGATGGGTTGGAGTTCTTTTACGGAGAGGAAATAATGGGGGTAACTACTACTGATGAGAAGATATTAGAAACTGGTGCTACTTCTAATTATCCTCCTCTTCTTGATGAAGATTTCAGCTGCCACGTGCAGCAATAG 1086 0.4411 MGRAPCCDKANVKKGPWSPEEDSKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYVTIGSRWSVIAAQLPGRTDNDIKNYWNTKLKKKLLGKHRTNKDHHQARSRKQAIANNNGGSGDYSSSSSSTTATHHQQQQPYYWSHMHMPVLPLPPPPPPLPPLPYAKENNQGPSFNDQDSLRKLLIKLGGKFSNNNNSSSDHDYQPPLEDGVIMNFDHQFPPYYEEEQIHHHHHHHHHIAGSSSSCMNNNSASNNSSSVAEQFSQNDNNNNNFNAAATRVGEMVSANNYPERLDGLEFFYGEEIMGVTTTDEKILETGATSNYPPLLDEDFSCHVQQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242055g00004 361 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Stsc242055g00004 361 PANTHER OS09G0431300 PROTEIN 1 302 - -
Stsc242055g00004 361 Gene3D - 7 68 - -
Stsc242055g00004 361 MobiDBLite consensus disorder prediction 116 163 - -
Stsc242055g00004 361 FunFam Transcription factor RAX3 7 68 - -
Stsc242055g00004 361 CDD SANT 71 111 IPR001005 -
Stsc242055g00004 361 SMART sant 67 115 IPR001005 -
Stsc242055g00004 361 SMART sant 13 64 IPR001005 -
Stsc242055g00004 361 MobiDBLite consensus disorder prediction 134 163 - -
Stsc242055g00004 361 Gene3D - 70 141 - -
Stsc242055g00004 361 CDD SANT 16 62 IPR001005 -
Stsc242055g00004 361 FunFam Transcription factor MYB36 70 141 - -
Stsc242055g00004 361 MobiDBLite consensus disorder prediction 253 297 - -
Stsc242055g00004 361 MobiDBLite consensus disorder prediction 177 201 - -
Stsc242055g00004 361 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc242055g00004 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Stsc242055g00004 361 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Stsc242055g00004 361 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Stsc242055g00004 361 MobiDBLite consensus disorder prediction 265 297 - -
Stsc242055g00004 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc242055g00004 361 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242055g00004 Stsc-Chr242055 14411 16190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242055g00004 1 137 MYB Transcription Factor Family AT5G65790 83.212 2.11e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc242055g00004 Myb_DNA-binding 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242055g00004 K09422 - gmx:100800290 315.849