Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc242054g00002 | ATGTCAACCAGAAAAACCAGAGGAGCCAGGGGCCACCGTGCCCCACACCACGACGACGACGACTTCACTCCAAAGCCTCTCCACCACCAACAACAACAACATCAGCACCATAATTCCACTCCTCCCATTCACCACCGCCGAGGCCACCACCACCAACACCAACAACCAAAATTGCGTTTCGTCAAGAAATCACAACTTGATTCCTCTGCTTCTGATTCCCTCCTTACCTCCGATCCAGTGGCGCCGCCTGCTGCCGATCACGTGACACCGCCGCCACTCGAGAGCCACAAAGAAGAGGATAGCAATAACATCGGTGCCAGTGAAGCTGTGGCAGTAACAAGAGAGGTAGATCACATGGCTCGTGAAAGCAACAGCAAGGAGGGGGAGGACGACGATGGTGATGATTATGTTGTGGATAGGCTTCATAGGTTATTGGATGCTGTGGAAGAGCCTCAGTTAATGGAGGAGCAGCTCAGTACCAATGACCAATTGCAGCAAGATGAGTTACTTGTGGTGGAATCGATATACGGAGAAAATGTTAGCAAGCTTGAAAGCTGCAAAGGACTCCGTTGTTTTCAGATTCAAATACACATTGAAGTTTTGGGTGAAATTGCCATTATTGCCAAGCTGAACTCTTCTAATGAGCCTGATGTTGCAAGCGGCAATTCAGACGACTTTTTATACTCTTTCAAAGTTCAGTATCTTCCACCAATTGTTTTGACATGCTTATTGCCGAAATCATATCCAAGCCACCAACCACCTTTATTTACAGTCTCTGTTCAATGGTTGGAATCTTTAGATATTTTAAGTCTATGCTCCCAGTTGGATTCTATATGGGCAGAGCAGCAAGGGCAAGAAGTAATATACCAGTGGGTAGATTGGTTACAAAGTTCTACTCTTTCTCACCTGGGATTTGATAAGGAAATTATACTTGGTCAGAATGGCGTGAACTGTGTTGGAGATGAGCGAGTTGTTTCAGGATCCATATCACTTGATTCTGCTATTCCTTTTATGCGAGGTTACAACAAAGAGCGGCATAATGAAAACTTCCTCAAAGAATTGCATGAGTGCAGTATTTGCTATAGCGAATACCCAGGTACTGAGTTTGTCCGGTTACCATGTCAGCATTTCTTTTGCTTGAAATGCCTGCAGACCTTCACTCAGATGCATGTAAAAGAAAGCACTATTAGTAGTCTTCAATGTCCTGAGTCAAAATGTAAGGTTATGATTCCACCTGGCCTTTTGAAACACTTGCTTGGTGATGAAGAGTACGAGCGCTGGGAATCCATGATGCTGGAGAAAACACTTGCATCAANNNNNNNNNNATGTGAAACACCTTGTATAGAGGATGAAGATCAGCATGCTCAATGCTCAAAATGCTTTTTTAGCTTTTGCACTCTCTGTCGGGAACGGCGCCATGTTGGCATAGCATGCATGACACTAGATATGAAACTTCAAATTTTGCAGGATCGTCAAAATTCGTCTCAATTAAAGGAAGATCAAAAGCTAAGGGAACGGGAGAAGATCAATGAAATGCTTAGTATAAAAGAAATTCATCGAGATTCCAAGTTGTGCCCTTCTTGTAGCATGGCAATCAATAGAACTGAAGGTTGTAACAAAATGAAGTGCAGCAATTGTGAAGCATATTTTTGTTACCGCTGCAACAAGTTAATTGATCCATCGGATCCATATGGTCATTTCAGGGATGGATCCTGTGAATTGTTCCCACAAGAAATGATTGAGAACTGGCAAGAGCGAATAAACCATCGGCAGGTCGTAGGACAATTGCAGGCTGAACTGTTTCCTCAACGCGGCCTGCCCTGTCCTAACTGTCGTCAATTCAATGCAAAGGTTGGAAACAATAATCACATGTTTTGCTGGGCATGCCAAAGCCATTACTGCTACTTGTGCAATGAAATCGTGAGGCGTGGCTCTAAGCATTATGGTCCAAAGGGCTGCAAACAGCACACAGAGGGATAA | 1980 | 0.4394 | MSTRKTRGARGHRAPHHDDDDFTPKPLHHQQQQHQHHNSTPPIHHRRGHHHQHQQPKLRFVKKSQLDSSASDSLLTSDPVAPPAADHVTPPPLESHKEEDSNNIGASEAVAVTREVDHMARESNSKEGEDDDGDDYVVDRLHRLLDAVEEPQLMEEQLSTNDQLQQDELLVVESIYGENVSKLESCKGLRCFQIQIHIEVLGEIAIIAKLNSSNEPDVASGNSDDFLYSFKVQYLPPIVLTCLLPKSYPSHQPPLFTVSVQWLESLDILSLCSQLDSIWAEQQGQEVIYQWVDWLQSSTLSHLGFDKEIILGQNGVNCVGDERVVSGSISLDSAIPFMRGYNKERHNENFLKELHECSICYSEYPGTEFVRLPCQHFFCLKCLQTFTQMHVKESTISSLQCPESKCKVMIPPGLLKHLLGDEEYERWESMMLEKTLASXXXXCETPCIEDEDQHAQCSKCFFSFCTLCRERRHVGIACMTLDMKLQILQDRQNSSQLKEDQKLREREKINEMLSIKEIHRDSKLCPSCSMAINRTEGCNKMKCSNCEAYFCYRCNKLIDPSDPYGHFRDGSCELFPQEMIENWQERINHRQVVGQLQAELFPQRGLPCPNCRQFNAKVGNNNHMFCWACQSHYCYLCNEIVRRGSKHYGPKGCKQHTEG | 659 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc242054g00002 | 659 | Pfam | RWD domain | 163 | 297 | IPR006575 | GO:0005515 | |
Stsc242054g00002 | 659 | SMART | RWD2001b | 167 | 302 | IPR006575 | GO:0005515 | |
Stsc242054g00002 | 659 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 157 | 577 | IPR031127 | GO:0004842|GO:0016567 | |
Stsc242054g00002 | 659 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 352 | 439 | IPR013083 | - | |
Stsc242054g00002 | 659 | SUPERFAMILY | RING/U-box | 511 | 567 | - | - | |
Stsc242054g00002 | 659 | CDD | RING-HC_ITT1-like | 351 | 410 | - | - | |
Stsc242054g00002 | 659 | Gene3D | - | 492 | 600 | - | - | |
Stsc242054g00002 | 659 | FunFam | RBR-type E3 ubiquitin transferase | 493 | 602 | - | - | |
Stsc242054g00002 | 659 | CDD | BRcat_RBR_RNF14 | 443 | 482 | - | - | |
Stsc242054g00002 | 659 | FunFam | RBR-type E3 ubiquitin transferase | 352 | 436 | - | - | |
Stsc242054g00002 | 659 | Pfam | IBR domain, a half RING-finger domain | 514 | 557 | IPR002867 | GO:0008270 | |
Stsc242054g00002 | 659 | Gene3D | Ubiquitin Conjugating Enzyme | 154 | 304 | IPR016135 | - | |
Stsc242054g00002 | 659 | ProSiteProfiles | RWD domain profile. | 167 | 302 | IPR006575 | GO:0005515 | |
Stsc242054g00002 | 659 | SUPERFAMILY | RING/U-box | 352 | 435 | - | - | |
Stsc242054g00002 | 659 | SUPERFAMILY | RING/U-box | 603 | 656 | - | - | |
Stsc242054g00002 | 659 | SMART | ring_2 | 357 | 404 | IPR001841 | - | |
Stsc242054g00002 | 659 | SMART | ring_2 | 608 | 637 | IPR001841 | - | |
Stsc242054g00002 | 659 | ProSiteProfiles | TRIAD supradomain profile. | 353 | 577 | IPR044066 | - | |
Stsc242054g00002 | 659 | MobiDBLite | consensus disorder prediction | 1 | 135 | - | - | |
Stsc242054g00002 | 659 | ProSiteProfiles | Zinc finger RING-type profile. | 357 | 405 | IPR001841 | - | |
Stsc242054g00002 | 659 | SMART | ibrneu5 | 507 | 572 | IPR002867 | GO:0008270 | |
Stsc242054g00002 | 659 | SMART | ibrneu5 | 425 | 478 | IPR002867 | GO:0008270 | |
Stsc242054g00002 | 659 | MobiDBLite | consensus disorder prediction | 59 | 76 | - | - | |
Stsc242054g00002 | 659 | MobiDBLite | consensus disorder prediction | 12 | 27 | - | - | |
Stsc242054g00002 | 659 | ProSitePatterns | Zinc finger RING-type signature. | 374 | 383 | IPR017907 | - | |
Stsc242054g00002 | 659 | MobiDBLite | consensus disorder prediction | 39 | 58 | - | - | |
Stsc242054g00002 | 659 | SUPERFAMILY | UBC-like | 158 | 297 | IPR016135 | - | |
Stsc242054g00002 | 659 | CDD | Rcat_RBR_RNF14 | 510 | 575 | IPR047548 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc242054g00002 | Stsc-Chr242054 | 22053 | 26171 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc242054g00002 | 357 | 567 | C3H Transcription Factor Family | AT2G31510 | 23.767 | 9.47e-12 | 65.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc242054g00002 | K11971 | - | gmx:100500662 | 893.264 |