Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242054g00002 ATGTCAACCAGAAAAACCAGAGGAGCCAGGGGCCACCGTGCCCCACACCACGACGACGACGACTTCACTCCAAAGCCTCTCCACCACCAACAACAACAACATCAGCACCATAATTCCACTCCTCCCATTCACCACCGCCGAGGCCACCACCACCAACACCAACAACCAAAATTGCGTTTCGTCAAGAAATCACAACTTGATTCCTCTGCTTCTGATTCCCTCCTTACCTCCGATCCAGTGGCGCCGCCTGCTGCCGATCACGTGACACCGCCGCCACTCGAGAGCCACAAAGAAGAGGATAGCAATAACATCGGTGCCAGTGAAGCTGTGGCAGTAACAAGAGAGGTAGATCACATGGCTCGTGAAAGCAACAGCAAGGAGGGGGAGGACGACGATGGTGATGATTATGTTGTGGATAGGCTTCATAGGTTATTGGATGCTGTGGAAGAGCCTCAGTTAATGGAGGAGCAGCTCAGTACCAATGACCAATTGCAGCAAGATGAGTTACTTGTGGTGGAATCGATATACGGAGAAAATGTTAGCAAGCTTGAAAGCTGCAAAGGACTCCGTTGTTTTCAGATTCAAATACACATTGAAGTTTTGGGTGAAATTGCCATTATTGCCAAGCTGAACTCTTCTAATGAGCCTGATGTTGCAAGCGGCAATTCAGACGACTTTTTATACTCTTTCAAAGTTCAGTATCTTCCACCAATTGTTTTGACATGCTTATTGCCGAAATCATATCCAAGCCACCAACCACCTTTATTTACAGTCTCTGTTCAATGGTTGGAATCTTTAGATATTTTAAGTCTATGCTCCCAGTTGGATTCTATATGGGCAGAGCAGCAAGGGCAAGAAGTAATATACCAGTGGGTAGATTGGTTACAAAGTTCTACTCTTTCTCACCTGGGATTTGATAAGGAAATTATACTTGGTCAGAATGGCGTGAACTGTGTTGGAGATGAGCGAGTTGTTTCAGGATCCATATCACTTGATTCTGCTATTCCTTTTATGCGAGGTTACAACAAAGAGCGGCATAATGAAAACTTCCTCAAAGAATTGCATGAGTGCAGTATTTGCTATAGCGAATACCCAGGTACTGAGTTTGTCCGGTTACCATGTCAGCATTTCTTTTGCTTGAAATGCCTGCAGACCTTCACTCAGATGCATGTAAAAGAAAGCACTATTAGTAGTCTTCAATGTCCTGAGTCAAAATGTAAGGTTATGATTCCACCTGGCCTTTTGAAACACTTGCTTGGTGATGAAGAGTACGAGCGCTGGGAATCCATGATGCTGGAGAAAACACTTGCATCAANNNNNNNNNNATGTGAAACACCTTGTATAGAGGATGAAGATCAGCATGCTCAATGCTCAAAATGCTTTTTTAGCTTTTGCACTCTCTGTCGGGAACGGCGCCATGTTGGCATAGCATGCATGACACTAGATATGAAACTTCAAATTTTGCAGGATCGTCAAAATTCGTCTCAATTAAAGGAAGATCAAAAGCTAAGGGAACGGGAGAAGATCAATGAAATGCTTAGTATAAAAGAAATTCATCGAGATTCCAAGTTGTGCCCTTCTTGTAGCATGGCAATCAATAGAACTGAAGGTTGTAACAAAATGAAGTGCAGCAATTGTGAAGCATATTTTTGTTACCGCTGCAACAAGTTAATTGATCCATCGGATCCATATGGTCATTTCAGGGATGGATCCTGTGAATTGTTCCCACAAGAAATGATTGAGAACTGGCAAGAGCGAATAAACCATCGGCAGGTCGTAGGACAATTGCAGGCTGAACTGTTTCCTCAACGCGGCCTGCCCTGTCCTAACTGTCGTCAATTCAATGCAAAGGTTGGAAACAATAATCACATGTTTTGCTGGGCATGCCAAAGCCATTACTGCTACTTGTGCAATGAAATCGTGAGGCGTGGCTCTAAGCATTATGGTCCAAAGGGCTGCAAACAGCACACAGAGGGATAA 1980 0.4394 MSTRKTRGARGHRAPHHDDDDFTPKPLHHQQQQHQHHNSTPPIHHRRGHHHQHQQPKLRFVKKSQLDSSASDSLLTSDPVAPPAADHVTPPPLESHKEEDSNNIGASEAVAVTREVDHMARESNSKEGEDDDGDDYVVDRLHRLLDAVEEPQLMEEQLSTNDQLQQDELLVVESIYGENVSKLESCKGLRCFQIQIHIEVLGEIAIIAKLNSSNEPDVASGNSDDFLYSFKVQYLPPIVLTCLLPKSYPSHQPPLFTVSVQWLESLDILSLCSQLDSIWAEQQGQEVIYQWVDWLQSSTLSHLGFDKEIILGQNGVNCVGDERVVSGSISLDSAIPFMRGYNKERHNENFLKELHECSICYSEYPGTEFVRLPCQHFFCLKCLQTFTQMHVKESTISSLQCPESKCKVMIPPGLLKHLLGDEEYERWESMMLEKTLASXXXXCETPCIEDEDQHAQCSKCFFSFCTLCRERRHVGIACMTLDMKLQILQDRQNSSQLKEDQKLREREKINEMLSIKEIHRDSKLCPSCSMAINRTEGCNKMKCSNCEAYFCYRCNKLIDPSDPYGHFRDGSCELFPQEMIENWQERINHRQVVGQLQAELFPQRGLPCPNCRQFNAKVGNNNHMFCWACQSHYCYLCNEIVRRGSKHYGPKGCKQHTEG 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242054g00002 659 Pfam RWD domain 163 297 IPR006575 GO:0005515
Stsc242054g00002 659 SMART RWD2001b 167 302 IPR006575 GO:0005515
Stsc242054g00002 659 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 157 577 IPR031127 GO:0004842|GO:0016567
Stsc242054g00002 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 352 439 IPR013083 -
Stsc242054g00002 659 SUPERFAMILY RING/U-box 511 567 - -
Stsc242054g00002 659 CDD RING-HC_ITT1-like 351 410 - -
Stsc242054g00002 659 Gene3D - 492 600 - -
Stsc242054g00002 659 FunFam RBR-type E3 ubiquitin transferase 493 602 - -
Stsc242054g00002 659 CDD BRcat_RBR_RNF14 443 482 - -
Stsc242054g00002 659 FunFam RBR-type E3 ubiquitin transferase 352 436 - -
Stsc242054g00002 659 Pfam IBR domain, a half RING-finger domain 514 557 IPR002867 GO:0008270
Stsc242054g00002 659 Gene3D Ubiquitin Conjugating Enzyme 154 304 IPR016135 -
Stsc242054g00002 659 ProSiteProfiles RWD domain profile. 167 302 IPR006575 GO:0005515
Stsc242054g00002 659 SUPERFAMILY RING/U-box 352 435 - -
Stsc242054g00002 659 SUPERFAMILY RING/U-box 603 656 - -
Stsc242054g00002 659 SMART ring_2 357 404 IPR001841 -
Stsc242054g00002 659 SMART ring_2 608 637 IPR001841 -
Stsc242054g00002 659 ProSiteProfiles TRIAD supradomain profile. 353 577 IPR044066 -
Stsc242054g00002 659 MobiDBLite consensus disorder prediction 1 135 - -
Stsc242054g00002 659 ProSiteProfiles Zinc finger RING-type profile. 357 405 IPR001841 -
Stsc242054g00002 659 SMART ibrneu5 507 572 IPR002867 GO:0008270
Stsc242054g00002 659 SMART ibrneu5 425 478 IPR002867 GO:0008270
Stsc242054g00002 659 MobiDBLite consensus disorder prediction 59 76 - -
Stsc242054g00002 659 MobiDBLite consensus disorder prediction 12 27 - -
Stsc242054g00002 659 ProSitePatterns Zinc finger RING-type signature. 374 383 IPR017907 -
Stsc242054g00002 659 MobiDBLite consensus disorder prediction 39 58 - -
Stsc242054g00002 659 SUPERFAMILY UBC-like 158 297 IPR016135 -
Stsc242054g00002 659 CDD Rcat_RBR_RNF14 510 575 IPR047548 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242054g00002 Stsc-Chr242054 22053 26171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242054g00002 357 567 C3H Transcription Factor Family AT2G31510 23.767 9.47e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242054g00002 K11971 - gmx:100500662 893.264