Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242054g00001 ATGTCAACCAGAAAAACCAGAGGAGCCAGGGGCCACCGTGCCCCACACCACGACGACGACGACTTCACTCCAAAGCCTCTCCACCACCAACAACAACAACATCAGCACCATAATTCCACTCCTCCCATTCACCACCGCCGAGGCCACCACCACCAACACCAACAACCAAAATTGCGTTTCGTCAAGAAATCACAACTTGATTCCTCTGCTTCTGATTCCCTCCTTACCTCCGATCCAGTGGCGCCGCCTGCTGCCGATCACGTGACACCGCCGCCACTCGAGAGCCACAAAGAAGAGGATAGCAATAACATCGGTGCCAGTGAAGCTGTGGCAGTAACAAGAGAGGTAGATCACATGGCTCGTGAAAGCAACAGCAAGGAGGGGGAGGACGACGATGGTGATGATTATGTTGTGGATAGGCTTCATAGGTTATTGGATGCTGTGGAAGAGCCTCAGTTAATGGAGGAGCAGCTCAGTACCAATGACCAATTGCAGCAAGATGAGTTACTTGTGGTGGAATCGATATACGGAGAAAATGTTAGCAAGCTTGAAAGCTGCAAAGGACTCCGTTGTTTTCAGATTCAAATACACATTGAAGTTTTGGGTGAAATTGCCATTATTGCCAAGCTGAACTCTTCTAATGAGCCTGATGTTGCAAGCGGCAATTCAGACGACTTTTTATACTCTTTCAAAGTTCAGTATCTTCCACCAATTGTTTTGACATGCTTATTGCCGAAATCATATCCAAGCCACCAACCACCTTTATTTACAGTCTCTGTTCAATGGTTGGAATCTTTAGATATTTTAAGTCTATGCTCCCAGTTGGATTCTATATGGGCAGAGCAGCAAGGGCAAGAAGTAATATACCAGTGGGTAGATTGGTTACAAAGTTCTACTCTTTCTCACCTGGGATTTGATAAGGAAATTATACTTGGTCAGAATGGCGTGAACTGTGTTGGAGATGAGCGAGTTGTTTCAGGATCCATATCACTTGATTCTGCTATTCCTTTTATGCGAGGTTACAACAAAGAGCGGCATAATGAAAACTTCCTCAAAGAATTGCATGAGTGCAGTATTTGCTATAGCGAATACCCAGGTACTGAGTTTGTCCGGTTACCATGTCAGCATTTCTTTTGCTTGAAATGCCTGCAGACCTTCACTCAGATGCATGTAAAAGAAAGCACTATTAGTAGTCTTCAATGTCCTGAGTCAAAATGTAAGGTTATGATTCCACCTGGCCTTTTGAAACACTTGCTTGGTGATGAAGAGTACGAGCGCTGGGAATCCATGATGCTGGAGAAAACACTTGCATCAANNNNNNNNNNATGTGAAACACCTTGTATAGAGGATGAAGATCAGCATGCTCAATGCTCAAAATGCTTTTTTAGCTTTTGCACTCTCTGTCGGGAACGGCGCCATGTTGGCATAGCATGCATGACACTAGATATGAAACTTCAAATTTTGCAGATCCATAGGAGCTTCTTCTTTCTAGAGGAAGTTAGAATGATCGTCAAAATTCGTCTCAATTAA 1530 0.4399 MSTRKTRGARGHRAPHHDDDDFTPKPLHHQQQQHQHHNSTPPIHHRRGHHHQHQQPKLRFVKKSQLDSSASDSLLTSDPVAPPAADHVTPPPLESHKEEDSNNIGASEAVAVTREVDHMARESNSKEGEDDDGDDYVVDRLHRLLDAVEEPQLMEEQLSTNDQLQQDELLVVESIYGENVSKLESCKGLRCFQIQIHIEVLGEIAIIAKLNSSNEPDVASGNSDDFLYSFKVQYLPPIVLTCLLPKSYPSHQPPLFTVSVQWLESLDILSLCSQLDSIWAEQQGQEVIYQWVDWLQSSTLSHLGFDKEIILGQNGVNCVGDERVVSGSISLDSAIPFMRGYNKERHNENFLKELHECSICYSEYPGTEFVRLPCQHFFCLKCLQTFTQMHVKESTISSLQCPESKCKVMIPPGLLKHLLGDEEYERWESMMLEKTLASXXXXCETPCIEDEDQHAQCSKCFFSFCTLCRERRHVGIACMTLDMKLQILQIHRSFFFLEEVRMIVKIRLN 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242054g00001 509 SUPERFAMILY UBC-like 158 297 IPR016135 -
Stsc242054g00001 509 SUPERFAMILY RING/U-box 443 483 - -
Stsc242054g00001 509 SMART ring_2 357 404 IPR001841 -
Stsc242054g00001 509 Gene3D Ubiquitin Conjugating Enzyme 153 304 IPR016135 -
Stsc242054g00001 509 SMART RWD2001b 167 302 IPR006575 GO:0005515
Stsc242054g00001 509 MobiDBLite consensus disorder prediction 1 135 - -
Stsc242054g00001 509 ProSiteProfiles Zinc finger RING-type profile. 357 405 IPR001841 -
Stsc242054g00001 509 MobiDBLite consensus disorder prediction 12 27 - -
Stsc242054g00001 509 MobiDBLite consensus disorder prediction 59 76 - -
Stsc242054g00001 509 ProSitePatterns Zinc finger RING-type signature. 374 383 IPR017907 -
Stsc242054g00001 509 ProSiteProfiles TRIAD supradomain profile. 353 509 IPR044066 -
Stsc242054g00001 509 Pfam RWD domain 163 297 IPR006575 GO:0005515
Stsc242054g00001 509 SMART ibrneu5 425 478 IPR002867 GO:0008270
Stsc242054g00001 509 MobiDBLite consensus disorder prediction 39 58 - -
Stsc242054g00001 509 FunFam RBR-type E3 ubiquitin transferase 352 436 - -
Stsc242054g00001 509 CDD RING-HC_ITT1-like 351 410 - -
Stsc242054g00001 509 SUPERFAMILY RING/U-box 352 435 - -
Stsc242054g00001 509 CDD BRcat_RBR_RNF14 443 482 - -
Stsc242054g00001 509 Pfam RING-type zinc-finger 357 402 IPR027370 -
Stsc242054g00001 509 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 352 439 IPR013083 -
Stsc242054g00001 509 ProSiteProfiles RWD domain profile. 167 302 IPR006575 GO:0005515
Stsc242054g00001 509 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 157 482 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242054g00001 Stsc-Chr242054 22053 26171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242054g00001 357 481 C3H Transcription Factor Family AT2G31510 22.222 2.85e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242054g00001 K11971 - gmx:100500662 568.926