Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242049g00006 ATGTCCTTCAATCAATCAAAATCGGACAAGAGTGAGGCTGTGTACCGAAAATCCGGGCGATCCGCCAGCTTTAATCAGCAGCGAGGCTCCTCCGGTGGTGCATACGGGAGGGGCGGCAGCGGTGGCGGTGCCGCACCTTCTCCGTCACTATCCTCTAACCGCAGTTTTAACAAGAAGTCTAATAATGCACAAGGTGGGCAATCAAGGGTAACCCCTGCTCCAGTAACAGAGTCTAATAGTACTTATGCAACCAGGACTGTACCAAATGGTAGCCATGTACAACCTCAGTTGCATGGAGGATCTGATGCACCAGTTACCAATACCAATGTCAAGTCATCAGAATCCTCAAATTCTCAGAGGACAGCCAGAGCTGTCCCAAAAGCTCCTACTTCACAACCTCCCACCTTGAGTTCTGATTCAGCTGCTTCAACAACCCCTGTTAAGGGAGATGCATCCAAGGCATTTCCTTTCCAATTTGGATCCATTAGTCCTGGTTTTGTGAATGGAATGTCTATTCCTGCTCGCACAAGCTCAGCTCCACCTAATTTAGATGAGCAGAAGCGTGCTCAGGCTCGCCATGATTCTTTTAAACCTGCACCAGCACCAGCACCTCCTGTTCCAAAGCAGCACTCTGTGAAGAAGGATACAGGTATTACTGGTCAAACTCATGCTGGGACTAGGGCAAAAAAAGATATGCAGGTGTCAGCATTGCCTCCAGGAAGCCAGATGCAGAAGCCTTCTGTTGTTCCTTTAAGTGGAATTTCGATGCCAATGGCATATCATCAGCCCCAGGCATCTGTACAGTTTGGCAGTCCGAATCCACAGATTCAGTCTCAGGGTATGCCAACAGCATCTCTTCAGATGCCTTTACCAATGCCTTTGCCAATTGGAAATGCTCCACAAGTGCAGCAACAGGTCTTTGTTGCTGGCCTTCAACCTCATCAGATGCATCAAGGGCTCATGCATCAGGGCCAAAACATGAGTTTTACTCCTCAAATGGGCCCTCAGTTGCCCCACCAGTTAGGTAGCATGGGTATTAGCATTGGCCCACAATATTCCCCTCAGCAAGGAGGAAAGTTTGCTCCTCGTAAAACTACTCCTGTCAAGATAACTCATCCCGAGACCCATGAGGAGCTTAGGCTTGATAAGAGAGCAGACACATCAGATGGTGGGTCATCCGGTGCTAAGTCTCACCCTAGTGTGTCTTCTCAATCTCAACCTGCATTTCCATCTATTAATTACTATCCATCCAATTCCTACAGTGCCCATTCTCCCTTTTATCATCCCTCTAGTAGTAGTCAGATAACTCCAAATTCTCAGCCACAGAGATTTAATTATGCAGTGAGCCAGGGTCCACAAAATGTTAGTTTCATGAATTCATCTTCTCATAGTTCGCTACCTGCTAATAAAGTTGTCAATCATAATCCTGGCATTGTTGAACCTTCAAATCCAAAATTTTCCCAGGATGTGCATAATGCTATCCCTCCATCATTAACAGGAACAACTTCTGTGTCTGTTAAACTTAGTAGTGGGTCTGGTGTTGTGGACTTGTCAGTTGCCCATTCCAATATTTCTGGTGCCCAAAAAACCAAAAAGATTGACTCTGCAAGATCTTCAGTATCTAACTTATCCAGTGATTCTTCAGTTTTGAGCTCATTGCCAAAACAATCAGCTGCATATACTAAAGTCACCGCTGCTCCCATGAAGGATTCATCTGCTGTGAATGAGGAGGCTGTTTCAGTTGTGTCTAATAATGAAGAAAAGGGGAAGGAATCTCTCAGTAGGTCAAATTCTTCGAAAGATAATAATAAGGTACAGAAGGAAGGCCAACTACAACATCCGGTTGCTGTACAGTCTCCTACTGTGGCAAATGTGCCTTCCCAAGATGTTGAGAGATCTACTGGGGGTTCTGAAACTGTAGGAACAAAAACAAAACATTCTGCAGCTGTTACCAGTGAAGATGTCACAGCAATGACTGAAGATGCATTATCAACTCCCTCTTTGAGCATGCCTCATTCTGAAGCAAAAAGCAACAGTGCTGCAGAACTTTCTTCTTGTGTTTCAGCTGATGGACCTGTTGCTCAAGCTGTGGATAGTTTGAAAACGAATGATGAGCTTGGTGAATTTTCACAACCGGATAAACTGTCAAAGAATAAAGATTCAGAAATGGGTGAAAAAACTGAAATTTCATCTATTCAAGGATGTAAACAAGAGCTGGATGAACCTACAAGCTGGCCTCCAGAATATGCAAACCAAAGCTCTACTGCTTTGTGTTCTTATACAGATGTTTGTTTGAGTAGAGACGATATTGCAGTTGGTAGTGAAGCTATTTCTGCAAGTCCTGGCACATTAGACCAGTCTTCTGATATTCTAGAAGCAACATCAGAACATCACGATGATGGTTTAGAGAATGGTGGCAGTGGTGTAGTTTCTCTTCCAGCACCAGATACTAATGATAGACCAATTCTAGATCAAAATAAGGTGAAAGCTACATCTAAGGGGAAAAAGAAAAGAAAAGAGATTCTTCAGAAAGCAGATGCTGCTGGGTCAACCTCTGATCTTTATAATGCATACAAGGGACCTGAAGAAAAGAAGGATGCTGTTGTTAGCTCAGACGAAGTGGAAAGTGTTTCTATTTCTGCAAGTTTAAAGCAGTTGTCTACTAATGCTGTTCAGCCAGATGCTTTAGCAGGTGAGAAATGCAGACAGAGTAAGCCTGAACTTGATGATTGGGAGGATGCAGCTGACTATTCTGCACCAAAGCTTGAAGTTTCAGATCAAACTGATCAGGTTATTGATGGATGTGTAGTCACAGTGAAAAGATACTCTCGAGATTTCCTTTTGAAGTTAGCAGAGCAGTGCACTGAGGTTCCTGAAGGATTTGAAATCACAGCAGACATTGCAGAGGCTTTGATGAGTGCCAATAGTAATTCACGTGATCCTCAACCTTCTCCTGGAAGGATTATAGATAGGCCCAGTGGGATGTCTCGAATGGATCGCCGCGGTGGTGGTATCACCGAGGACGACAAATGGAGTAAAGTTTCCAATGCTTTTCACACTGGTATGCGTTTGGATAGTATTGGAGGTAATGCAGGATTTTACCCAGTTCAAGGAGGCAATTTTGGTGTATTAAGGAATCCTCGCTCGCCTCTGCCATATGCTGGGGCTGGAGGGATTCTTTCTGGGCCAATGCAATCCATGGTAAATGTGGGTGGAATGCCAAGAAACAGCTCTGACAGTGAAAGGTGGCAGCGTGCTTCTAGCTTCCAGCAAAGGGTCTTGGTTCCTTCTACTCCTCAAAGTCCTTTGCAGATGATGCACAAAGCTGACAAGAAGTACGAGGTTGGTAAAGTGACGGATGCGGAAGAGGCCAAGCAGAGGCAATTGAAAGCTATATTAAATAAGTTAACTCCTCAGAATTTTGAGAAGCTTTTTGAGCAGGTAAAAGCAGTTAACATTGACAATGCAGTAACTCTCACTGGTGTCATCTCACAAATTTTTGAGAAGGCTTTGATGGAACCTACCTTCTGTGAAATGTATGCCAATTTCTGTTCACATCTGGCAGCTGAGTTGCCTGATTTTAGCGAAGACAATGAGAAGATTACTTTTAAGAGGTTATTATTAAACAAGTGCCAGGAAGAATTTGAGAGGGGTGAAAGAGAGCAGGAAGAAGCAAACAAGGCCGATGAAGGTGAGGTCAAGCAGTCTGATGAACAAAGGGAAGAGAAACGAACGAAGGCTAGAAGACGTATGCTGGGTAATATCAGATTGATAGGAGAACTGTATAAGAAGAAAATGTTAACAGAGAGGATTATGCATGAGTGCATCAAGAAGTTATTAGGTCAGCATCAGGATCCAGATGAAGAAGATATTGAGGCTTTGTGCAAGCTCATGAGTACAATTGGGGAGATGATTGACCATCCCAAAGCCAAGGTGCATATTGATGTGTATTTTGAAAGGATGAGATCATTATCAAACAACATGAATTTATCTTCAAGGGTGAGGTTCATGTTGAAAGATGCCATTGATTTAAGAAAGAACAAATGGCAACAAAGGAGGAAAGTTGAAGGTCCAAAGAAGATTGAGGAGGTACATAGAGATGCTACACAAGAGCGGCAGGCCCAAACTGGTAGACTGGGTCGTGGTCTGGGAAATAATCCAGTAAGAAGAAACCCCATGGATTTTGGTCCAAGAGGGGCATCTATGTTACCTTCACCTGTTGCTCAGATGGGTGGGGTACGTGGGCTTCCTGCTCAAATTCGCGGTTATGGTTCACAAGATGCTCGTATTGAAGATAGGCATGAGGCTAGGATTCTCTCAGTTCCACTGAGTCAAAGACTGGGTGATGATTCAATTACCCTAGGACCCCAAGGGGGTCTTGCTAGGGGAATGTCCATAAGAGGTTCAATTGCAGTTTCAAGTTCAACCAGTTTTAATGGTTATAGTAATTTAGCAGAGGGTTCACCATACAATTCTAGGGAAGGCCTAGCATCAAGATATATTCCAGATAGATTCACTGCTCAAATTGCTTCTGATCAATCAAGTGCTCAAGAAAGAAATATCAATTACGGTAACATGGACTTGAGAAAGGCAGATGGGAATTTTGACAGACCTGTCGTAACTTCGCCGTCTCGACCTCATGGGACAGCAGTCTCCCAAAATCCTTCTTCGGAAAGGGTTTGGCCAGAAGAACGGTTGCGAGACATGTCAATGGCAGCAATAAGAGAATATTATAGTGCTAGGGATGAGAAGGAAGTTGTTTTGTGTGTGAAAGATTTGAACTCTCCAAGCTTCCATCCTTCCATGGTGTCGATTTGGGTCACAGACTCTTTTGAGAGAAAGAACACAGAGAGAGATCTTCTGGCTCAGCTACTAGTCAACCTTGTGAAGTCTCAGGATGGTACCTTGAGTCAAGCTCAGCTCATCAAAGGGTTTGAATCTGTTCTCAGTACTTTGGAAGATGCGGTTAACGATGCCCCCAAAGCGCCGGAGTTTCTTGGCCGCATTTTTGCCAAAATTGTGACAGAGCATGTAGTCTCTTTGAAAGAGATCGGGCAGTTAATACATGATGGCGGAGACGAACCAGGCAGTCTCTTAAGAGCAGGACTTGCAGCTGATGTTCTTGGAAACACCTTGGAGGTCATAAAAATGGAGAAAGGTGATGCTGTTTTAAGTGAGATCCGGACAAGCTCCAACTTGCGGTTGGAGACTTTCCGGCCACCTGAACCTTTGAAATCAAGGAAGTTAGAGAGTTTTATTTAG 5262 0.4401 MSFNQSKSDKSEAVYRKSGRSASFNQQRGSSGGAYGRGGSGGGAAPSPSLSSNRSFNKKSNNAQGGQSRVTPAPVTESNSTYATRTVPNGSHVQPQLHGGSDAPVTNTNVKSSESSNSQRTARAVPKAPTSQPPTLSSDSAASTTPVKGDASKAFPFQFGSISPGFVNGMSIPARTSSAPPNLDEQKRAQARHDSFKPAPAPAPPVPKQHSVKKDTGITGQTHAGTRAKKDMQVSALPPGSQMQKPSVVPLSGISMPMAYHQPQASVQFGSPNPQIQSQGMPTASLQMPLPMPLPIGNAPQVQQQVFVAGLQPHQMHQGLMHQGQNMSFTPQMGPQLPHQLGSMGISIGPQYSPQQGGKFAPRKTTPVKITHPETHEELRLDKRADTSDGGSSGAKSHPSVSSQSQPAFPSINYYPSNSYSAHSPFYHPSSSSQITPNSQPQRFNYAVSQGPQNVSFMNSSSHSSLPANKVVNHNPGIVEPSNPKFSQDVHNAIPPSLTGTTSVSVKLSSGSGVVDLSVAHSNISGAQKTKKIDSARSSVSNLSSDSSVLSSLPKQSAAYTKVTAAPMKDSSAVNEEAVSVVSNNEEKGKESLSRSNSSKDNNKVQKEGQLQHPVAVQSPTVANVPSQDVERSTGGSETVGTKTKHSAAVTSEDVTAMTEDALSTPSLSMPHSEAKSNSAAELSSCVSADGPVAQAVDSLKTNDELGEFSQPDKLSKNKDSEMGEKTEISSIQGCKQELDEPTSWPPEYANQSSTALCSYTDVCLSRDDIAVGSEAISASPGTLDQSSDILEATSEHHDDGLENGGSGVVSLPAPDTNDRPILDQNKVKATSKGKKKRKEILQKADAAGSTSDLYNAYKGPEEKKDAVVSSDEVESVSISASLKQLSTNAVQPDALAGEKCRQSKPELDDWEDAADYSAPKLEVSDQTDQVIDGCVVTVKRYSRDFLLKLAEQCTEVPEGFEITADIAEALMSANSNSRDPQPSPGRIIDRPSGMSRMDRRGGGITEDDKWSKVSNAFHTGMRLDSIGGNAGFYPVQGGNFGVLRNPRSPLPYAGAGGILSGPMQSMVNVGGMPRNSSDSERWQRASSFQQRVLVPSTPQSPLQMMHKADKKYEVGKVTDAEEAKQRQLKAILNKLTPQNFEKLFEQVKAVNIDNAVTLTGVISQIFEKALMEPTFCEMYANFCSHLAAELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADEGEVKQSDEQREEKRTKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQHQDPDEEDIEALCKLMSTIGEMIDHPKAKVHIDVYFERMRSLSNNMNLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDATQERQAQTGRLGRGLGNNPVRRNPMDFGPRGASMLPSPVAQMGGVRGLPAQIRGYGSQDARIEDRHEARILSVPLSQRLGDDSITLGPQGGLARGMSIRGSIAVSSSTSFNGYSNLAEGSPYNSREGLASRYIPDRFTAQIASDQSSAQERNINYGNMDLRKADGNFDRPVVTSPSRPHGTAVSQNPSSERVWPEERLRDMSMAAIREYYSARDEKEVVLCVKDLNSPSFHPSMVSIWVTDSFERKNTERDLLAQLLVNLVKSQDGTLSQAQLIKGFESVLSTLEDAVNDAPKAPEFLGRIFAKIVTEHVVSLKEIGQLIHDGGDEPGSLLRAGLAADVLGNTLEVIKMEKGDAVLSEIRTSSNLRLETFRPPEPLKSRKLESFI 1753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242049g00006 1753 SMART if4_15 1126 1348 IPR003890 GO:0003723|GO:0005515
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 1541 1562 - -
Stsc242049g00006 1753 Pfam MA3 domain 1570 1678 IPR003891 -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 525 559 - -
Stsc242049g00006 1753 ProSiteProfiles MI domain profile. 1565 1689 IPR003891 -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 214 228 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 1217 1246 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 1545 1559 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 525 683 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 776 843 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 346 410 - -
Stsc242049g00006 1753 Gene3D - 1560 1753 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 975 1008 - -
Stsc242049g00006 1753 Gene3D - 1126 1361 - -
Stsc242049g00006 1753 FunFam Eukaryotic translation initiation factor 4G 1126 1361 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 993 1008 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 18 33 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 171 229 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 369 389 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 702 751 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 1363 1391 - -
Stsc242049g00006 1753 FunFam Eukaryotic translation initiation factor 4G 1559 1752 - -
Stsc242049g00006 1753 SUPERFAMILY ARM repeat 1121 1350 IPR016024 -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 45 147 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 390 410 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 1 149 - -
Stsc242049g00006 1753 SUPERFAMILY ARM repeat 1561 1743 IPR016024 -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 707 726 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 425 446 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 598 683 - -
Stsc242049g00006 1753 SMART ma3_7 1566 1680 IPR003891 -
Stsc242049g00006 1753 Coils Coil 1208 1228 - -
Stsc242049g00006 1753 MobiDBLite consensus disorder prediction 346 360 - -
Stsc242049g00006 1753 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 336 1753 IPR045208 GO:0003743
Stsc242049g00006 1753 Pfam MIF4G domain 1126 1348 IPR003890 GO:0003723|GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242049g00006 Stsc-Chr242049 26208 34412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242049g00006 1 1752 Eukaryotic Initiation Factors Gene Family AT3G60240 45.109 0.0 1224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242049g00006 K03260 - gmx:100796636 2281.14