Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242048g00009 ATGAAGACGAGCTCCATTTTCTGCTCTCTCTTCATTCTCAACTTCCTTCTCTCCGTTCCGTTATCGCTTGCGCAGAACCAAAATGACTCTTCTGACGCTAATAACAACTACAACACACAGTTCAGCCCTTCCTTGGCAATAATCGTCGTCATTCTCGTCGCAGCACTCTTCCTCATGGGATTCTTCTCCATCTACATCCGCCACTGCGCCGATTCGCCCTCCGGCACCGCCCTTCCAATCACTGCCGGTGGAGGAAGGTCTAGAAGAGCGGCGCGAGGACTTGACCCGGCGGTGATCGAAACTTTTCCGATTCTGGAGTATTCGGAGGTGAAGATCCACAAGATCGGGAAAGAGATTCTGGAATGTGCGGTGTGCCTCTGCGAGTTCGAGGACACTGAAACGCTGCGTTTGATTCCAAAGTGTGACCACGTCTTCCATCCGGAGTGCATCGACGAGTGGCTTTCCTCCCACACAACCTGCCCCGTTTGCCGCGCCAACCTCGTTCCGCAGCCCGGCGAGTCCGTTCACGCGGTTCCACTCGTCGCAACCGCCGATCTCGAGGCGCAAACCGACGCCGCCGTTGACGCCGCAGCGCCGGAGGAAGAAGCAGCGGTGGCGTCATCGGAGCCGGAAGTGATTTCGATTCCGAAAAGCTTGACGCTGAATCGGAACAGGACGACGCGCGCGTCTCGTTCGAGCCGGAGGAGGAATTTTCCTCGGTCGCACTCGACCGGGCATTCTGTGGTCCAACCTGGAGAGAACACGGACCGGTTCACATTGAGATTGCCTGTGGCAGTTAGAAGAGAGATAATAAACCGGGAGTTGCAACGGTCTAACAGCTTGTTGGTTTTGCCTAGAGAGGGCAGTTCAAGGCAGGGAAGTAGTAGGGGAAGGACTTTGAGACGGTTGGACCGCAGTTTCAAATCAGACCGGTGGGTTTTGACTATGGCGCCGCCGTTCTTGGTTAGAGGAACTTCGGTTAGGTCGCCGAAGGTGGTTGATAGCACCGGCGGGGAAGGAACCTCGTCGTCTACAGCCCCTATTTTGCCGCCGTCGGCCGTTGACTCTGCTAGACCTCCGGTTTGA 1086 0.5608 MKTSSIFCSLFILNFLLSVPLSLAQNQNDSSDANNNYNTQFSPSLAIIVVILVAALFLMGFFSIYIRHCADSPSGTALPITAGGGRSRRAARGLDPAVIETFPILEYSEVKIHKIGKEILECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPQPGESVHAVPLVATADLEAQTDAAVDAAAPEEEAAVASSEPEVISIPKSLTLNRNRTTRASRSSRRRNFPRSHSTGHSVVQPGENTDRFTLRLPVAVRREIINRELQRSNSLLVLPREGSSRQGSSRGRTLRRLDRSFKSDRWVLTMAPPFLVRGTSVRSPKVVDSTGGEGTSSSTAPILPPSAVDSARPPV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242048g00009 361 Pfam Ring finger domain 121 164 IPR001841 -
Stsc242048g00009 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 286 - -
Stsc242048g00009 361 MobiDBLite consensus disorder prediction 329 350 - -
Stsc242048g00009 361 CDD RING-H2_EL5-like 121 164 - -
Stsc242048g00009 361 MobiDBLite consensus disorder prediction 326 361 - -
Stsc242048g00009 361 SUPERFAMILY RING/U-box 121 171 - -
Stsc242048g00009 361 FunFam E3 ubiquitin-protein ligase ATL6 83 170 - -
Stsc242048g00009 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 169 IPR013083 -
Stsc242048g00009 361 SMART ring_2 122 163 IPR001841 -
Stsc242048g00009 361 MobiDBLite consensus disorder prediction 216 254 - -
Stsc242048g00009 361 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242048g00009 Stsc-Chr242048 33121 34206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242048g00009 1 339 Rapid Response to Elicitors AT3G05200 46.814 2.19e-93 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242048g00009 K10664 - gmx:100781706 392.889