Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242048g00006 ATGGAAGTAAATAACAGCACCACCGCTGTGCCTAGTGCTGCAATAATGCCACCAACCCTTCTTCCCACAACCAACCAAACCACTCACAAACACTCACATTCCAATTTCCCCTCCAAAACCATTCTCATTACCATCACTCTCCTCACCTCACTTACCCTCTTCTTTGCCATTTTTCTTATTGCATTCATGCTCCGTCGTCTCAAATCAACCAACACTACCCCTCCTCCTTCCAAACATAATAACAACACCACCACCAACACCACTTTCCCCTCCCTCCCTTCAACAACATTGCCCTTCACTTCAAGTCCAGAAGTGAAGGGAGGATGTCTTCATCCAACACCAACACCAAAATTTCGAGGTGTTCAAGTGCTGACATTTAAAGAGATAGAAGTGGCCACAGGTGGAATGCGTGATGGAAATGTAATTGGCAATGGAGACTCTGGTTTGGTCTACAAAGGTATCCTAAGTGATGGAACTTTGGCTGCAATTAAGCTTTTGCAGAGGGAAGGCAAGCAAGAGGAGCGTGCCTTCAGAATTGAGGTGGATATACTAAGCCGTTTGCAATGTCCTTATTTGGTGGAGTTGCTAGGCTATTGTGCGGACCAGAAACACAGGGTGTTGGTATTTGAATACATGCCTAATGGAACACTCTATCACCATCTCCACTCTCTTAATAATCAATCTCAGCCGTTAGATTGGTGGACCCGGATGAGAATAGCCCTTGATTGTGCCAAGGCTTTGGAGTTCTTGCATGAACATGCTGCCTTCCCTGTCATACACCGTGACTTCAAGACTGCTAATGTTCTCTTGGATCAAAATTTCCGTGCTAAGGTCTCTCATTTTGGATTGGCCAAGACTGGCTCCGACAAGATCAACGGTCAGATTTCCACCCGCGTCTTAGGCACCACTGGATATCTTGCACCAGAGTATGCATCCACGGGAAAACTTACTACGAAATCAGATGTATATAGTTATGGCGTGGTTCTTCTGGAGTTGCTAACCGGACGTGTGCCGGTTGATATTAAGCGGCCTCCAGGAGAACATGTTCTTGTCTCTTGGGCTCTTCCAAGGTTAACAAACAGAGAAAAAGTGGTGGAAATGGTTGACCCTGCTCTTAGAGGACAGTACTCAAAGAAGGATCTAATTCAGATAGCAGCAATAGCAGCAATGTGCATACAGACAGAAGCAGATTACAGGCCACTAATGACGGATATTGTACAATCACTGATACCACTTGTTAGGAACCCTTCCTCCTCTTCTGTTACTTCTTCTTCATCTACCTCCCTAAGATTTCATAAAAGTCCAACCCATAGAAGCTGCCCACCATAA 1329 0.453 MEVNNSTTAVPSAAIMPPTLLPTTNQTTHKHSHSNFPSKTILITITLLTSLTLFFAIFLIAFMLRRLKSTNTTPPPSKHNNNTTTNTTFPSLPSTTLPFTSSPEVKGGCLHPTPTPKFRGVQVLTFKEIEVATGGMRDGNVIGNGDSGLVYKGILSDGTLAAIKLLQREGKQEERAFRIEVDILSRLQCPYLVELLGYCADQKHRVLVFEYMPNGTLYHHLHSLNNQSQPLDWWTRMRIALDCAKALEFLHEHAAFPVIHRDFKTANVLLDQNFRAKVSHFGLAKTGSDKINGQISTRVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPPGEHVLVSWALPRLTNREKVVEMVDPALRGQYSKKDLIQIAAIAAMCIQTEADYRPLMTDIVQSLIPLVRNPSSSSVTSSSSTSLRFHKSPTHRSCPP 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242048g00006 442 FunFam Receptor-like serine/threonine-protein kinase ALE2 212 428 - -
Stsc242048g00006 442 MobiDBLite consensus disorder prediction 415 434 - -
Stsc242048g00006 442 Pfam Protein tyrosine and serine/threonine kinase 139 409 IPR001245 GO:0004672|GO:0006468
Stsc242048g00006 442 SUPERFAMILY Protein kinase-like (PK-like) 117 409 IPR011009 -
Stsc242048g00006 442 ProSitePatterns Protein kinases ATP-binding region signature. 142 164 IPR017441 GO:0005524
Stsc242048g00006 442 MobiDBLite consensus disorder prediction 1 34 - -
Stsc242048g00006 442 MobiDBLite consensus disorder prediction 71 92 - -
Stsc242048g00006 442 PANTHER OS07G0668900 PROTEIN 117 419 - -
Stsc242048g00006 442 MobiDBLite consensus disorder prediction 415 442 - -
Stsc242048g00006 442 ProSiteProfiles Protein kinase domain profile. 136 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242048g00006 442 Gene3D Transferase(Phosphotransferase) domain 1 212 432 - -
Stsc242048g00006 442 CDD STKc_IRAK 142 412 - -
Stsc242048g00006 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Stsc242048g00006 442 Gene3D Phosphorylase Kinase; domain 1 111 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242048g00006 Stsc-Chr242048 24718 27262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242048g00006 104 436 Receptor kinase-like Gene Family AT3G58690 61.424 1.59e-150 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Stsc242048g00006 PK_Tyr_Ser-Thr 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242048g00006 - - pcin:129299908 548.895