Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242048g00003 ATGGCCTTCTCTGCAATTGCATCATCACTCACACTGCTTCTCATTCTCATATTATTACTATTTTTCTTCCTAAATTTACCATCTTCTCCCTCTCTCTTCTCCACCGCCACCAAACGAAGGTCTCTTCTAACAACCACGTGCTCCGCTGACCACGGATCCAATGGCGGGATCCTCAACTACCTCTACCTCCACAACTGCCTCTTCCGCCGCAACGTCTTTCTATCCATCCCCGCCCTCTCCATGCTCCTCCTCCTCCAATTCTACGTCCTCATCAAGACCGCGCAGCACCACTTCTCCGTCGTCACCACCAAGCTTGCCTCTCACCTCAACCTATCCCCCTCCATGGCCGCCGTCACCCTCCTAGCCCTCGGCAATGGCTCCCCCGACGTATTCTCTTCCCTCGCCGCTCTCCGCTCTGGCCAGTACCGCACAGGATTCGGTGCCATCCTCTCCGCCGGTACCTTCGTCTCCGCCCTCGTTGTCGGATTCGTCGCCATCTACGCTGCTCCGTTCTCCCTCGATCCCGCGCCCTTCGTCAGGGACGTGCTCTTCTACTTGACGGCAGCGATGTTCCTGTTCTACGTTTATCTTAGCGCCGAGATCTTCCTCTGGCAGGCGATTGCATTCGTAGGGTTTTACGCGTTTTTTGTTGGACTCGTGTTCTATATGGACTTAGGAGTAGGAGATGGCAGAGGCAAGAGTGGGAATTCGTCCACAGATCTTGAGCAGCAGAAGGAACTAGCACCGGTGGTCGTTGACTCCGACGTCACAGTTTCAGGATCTATGAACGACGAGAAGCGCAGTTCCGGTTTCCCGGGAGCTTGTGGATTGATTTCTAAAGCATGGGAGATTCCTGTTGCAACTCTCTTGAAATTGTCAATCCCCCAACCAGCGCCGTCGCAATGGAGCAGACTTTACTCGTCGGCAAACATCGCTCTTTGTCCGATCGCCCTCTTGTATGCCTGCAAATCATTTGTGCCATTTGATCATCCCATAGCCTTCCTCCTCCCCAACACTGACTTCCCGCTCTGGTCAGTAGTTCTTACCACAAGCTTCTGCCTTGCATTGCTTCATTTTGTGATTGAAAAAGAACCCCCGAAAACCGAGCAATTGCCTGTGGTTGTCATGGCGTTTGTCATGAGTGTGTTTTGGATATCCACCGCAGCTGGAGAACTGGTGAACTGCCTTGAAACTTTAGGTCTTGTTCTCAAACTGCCGCCGGCAATCCTCGGTCTGACGGTGCTGGCTTGGGGCAATTCGGTGGGGGATCTAGTCGCGGATGTAGCAGTTGCCAAAGCCGGTCATCCGGCTATGGCAATGGCTGGATGCTTTGCTGGACCAATGTTTAACATGCTTGTAGGTCTTGGATCAGCTCTGGTGATTCAGACTGCTAATATTTACCCTAAAGCTTATGTGCTTAATTTCCACATTGGTATAGTGATTGCATTTGTGTTCCTGCTTTTAAGTCTTATGGGGTCTCTCTTAGTGATCACTTGGTGCAGATTCCGAGTGCCTAGGTTTTGGGGGTTTTGTCTGGTCGGCCTCTATGTTGTTTTTGTAGCAGTGAGTTTGATGGTGGCCATGTTTTCTGGGTGA 1596 0.5169 MAFSAIASSLTLLLILILLLFFFLNLPSSPSLFSTATKRRSLLTTTCSADHGSNGGILNYLYLHNCLFRRNVFLSIPALSMLLLLQFYVLIKTAQHHFSVVTTKLASHLNLSPSMAAVTLLALGNGSPDVFSSLAALRSGQYRTGFGAILSAGTFVSALVVGFVAIYAAPFSLDPAPFVRDVLFYLTAAMFLFYVYLSAEIFLWQAIAFVGFYAFFVGLVFYMDLGVGDGRGKSGNSSTDLEQQKELAPVVVDSDVTVSGSMNDEKRSSGFPGACGLISKAWEIPVATLLKLSIPQPAPSQWSRLYSSANIALCPIALLYACKSFVPFDHPIAFLLPNTDFPLWSVVLTTSFCLALLHFVIEKEPPKTEQLPVVVMAFVMSVFWISTAAGELVNCLETLGLVLKLPPAILGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGSALVIQTANIYPKAYVLNFHIGIVIAFVFLLLSLMGSLLVITWCRFRVPRFWGFCLVGLYVVFVAVSLMVAMFSG 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242048g00003 531 Gene3D - 111 239 IPR044880 -
Stsc242048g00003 531 Gene3D - 304 526 IPR044880 -
Stsc242048g00003 531 Pfam Sodium/calcium exchanger protein 80 220 IPR004837 GO:0016020|GO:0055085
Stsc242048g00003 531 Pfam Sodium/calcium exchanger protein 375 524 IPR004837 GO:0016020|GO:0055085
Stsc242048g00003 531 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 279 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242048g00003 Stsc-Chr242048 13515 16086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242048g00003 4 530 Antiporters AT1G08960 65.505 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242048g00003 K13754 - gmx:100775437 754.592