Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242048g00002 ATGGATCATCAAGGGCATGGCCAAAACCCATCCATGGGGGTTGTGAGTAGCGGGGCTCAACTAACGTATGGTACCAATCCCTACCAGCCAAACCAAATGACTGGGGCGCCCGGATCTGTTGTTACATCAGTTGGGAACATGCAAGCCACCGGTCAACCTGCTGGAGCTCAACTGGGACAACATCAACTTGCTTATCAGCACATTCATCAGCAACAGCAGCAGCAACTTCAGCAACAACTCCAGGCTTTCTGGGCAAATCAGTACCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGTCTCCCCTTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTCAGAATGATATCAGCTGAGGCACCAGTCATATTTGCTAGGGCATGCGAAATGTTCATTTTAGAGCTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGAAGAACCCTTCAGAAAAATGATATTGCTGCTGCAATCACAAGGACTGATATCTTTGATTTTCTGGTTGATATTGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCAAGAGGAACAATGCCTGTTGCAGGCCCGGCTGATGCAATGCCTTACTGTTATATGCCTCCTCAACATGCACCCCAAGTTGGACCTGCTGGAGTCATAATGGGTAAGCCTGTGATGGACCCAAATATGTATGCTCAACAGTCTCATCCCTACATGGCACCACAAATGTGGCCGCAGCCACCAGACCAACGACAATCATCTCCAGATCATTAG 783 0.4725 MDHQGHGQNPSMGVVSSGAQLTYGTNPYQPNQMTGAPGSVVTSVGNMQATGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADAMPYCYMPPQHAPQVGPAGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQSSPDH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242048g00002 260 SUPERFAMILY Histone-fold 68 173 IPR009072 GO:0046982
Stsc242048g00002 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Stsc242048g00002 260 MobiDBLite consensus disorder prediction 1 36 - -
Stsc242048g00002 260 Pfam Core histone H2A/H2B/H3/H4 67 164 IPR007125 GO:0003677
Stsc242048g00002 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 62 200 - -
Stsc242048g00002 260 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
Stsc242048g00002 260 MobiDBLite consensus disorder prediction 9 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242048g00002 Stsc-Chr242048 8572 11110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242048g00002 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.306 3.29e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc242048g00002 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242048g00002 K08066 - gmx:100527803 425.631