Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242047g00007 ATGTTGCATTTCAACAAGGGCGAGGCGGTGGAGGCCACACACCCTAACAACCCAAACAAACGTAACCGTCTCTACCCAGCTTCCGTTCTCCGCGCCACCAACGACAGCCGCCTCTTCATCCAATACCACAATCTCTACTCCAATCACCCTCCTAATAACCGCCTCCGCTGCTGGCTTCACCTCGCTTGCGTCAGGCCCAAGCTTCCCGACTCCCTCAACCCTTGGTTTAAGGTCGGCGATCACGTCGACGCCTTCTGCGAAACCAACCACGCTCACGGCGCCGTCGGCGGCGCCTGGTGCTCCGCCACTGTCGACGCCATCCTCGAGAATTCCAAGTATGCGGTGTCGTTTTGGGAGGACAACGACGACAATGGGAAGACGGAGCGTGCCGTTGTTGAACAATGTAGGTTGCGTCTTCACCGTGAATGGGTCAATGGAAACTGGGTCCCACCTCTTCCATCTCAAATGGATGACAATCTCCAATTTACATCAAGCAAGCCAAAGAAACTCAAAGCTGATGAAGCCTATAAGCCACCTGAGATTGTGACGATGACAAATACAGGAAATTTAAGATTTAAAATCAAATATAGCAGGAGACCATTAAAAGAGTCAAAGTTTAAGAAAGGGATAATGGTGGAAGTCAGGGATGAGAATGAAGGTTTTGAGGGTGCTTGGTTCATTGGTACTATTGTTAGCTCAGTAGGTAAAGACAGGTTTCTCGTAGAATTTAGGGACCTCATAACAGATGATGGAACTCATCAGCTGTTGAAAGAAGAAGTCCATGAAAATTTTATTAGGCCCTGTCCACCTGAAGTTCCTTCTGTTAGTTCTTTCAAACAGTTTCAAGAGGTTGATGCATGGTATAATGATGCTTGGTGGGAAGGCGTGGTTCTTGAAGTGGTAAATAGCAGAGAGAGTTTAGTTTCTTTCATTCACAAAGATGTATTGAGAGTTGAAAATTCCAAGTTAAGGCCTCATCAGGATTGGTTTGATGGAAAATGGGTCATGGCATCTAAGGAGTCAAGTGAGCTGACAAAGAAATTTGGAGATGTGATGTCAAAAGCCAAGAGTTTCACTGGAAATAAAATAATCTTGAAATGCCTGAAATCTCACGAGCCAGAGCCGGAAAAGGTGCCAAGAGTTCTAATGTCGAGTTGTAGAAACACCAGCATCAAATTTGCATCGCATTTATATAAAGGTGCAAAGGTAGAAGTCACAAGTGATGAAGAAGGTTATCAAGGTGCCTGGTACACCGCCATCGTTGTTAACTCTTTACAGAATGGCAAGTATGTGGTGGAGTATCTCACCCTGAAAACTGACGACTTAACTGAACAACTGAAAGAGGAAGCAGATGCTTCAAATATCAGGCCAGTTCCACCAGACATTCAACGTCGCCGTCGCTATGCGCTGCGCGAACGCGTTGACGCTTGGTACAACGATGGATGGTGGGAAGGTCAGGTATGCGGTTTCTCTGGCTACAAGTATAGGGTTTACTTTTGGCCTACAAAGGAGGAGCTGGAATTTGAACAATGTCATCTAAGGCCTCATCAAGAATGGATTGATGGAAGATGGGTACATGCTCCTTTTGTACAAGGTTTTTGA 1602 0.46 MLHFNKGEAVEATHPNNPNKRNRLYPASVLRATNDSRLFIQYHNLYSNHPPNNRLRCWLHLACVRPKLPDSLNPWFKVGDHVDAFCETNHAHGAVGGAWCSATVDAILENSKYAVSFWEDNDDNGKTERAVVEQCRLRLHREWVNGNWVPPLPSQMDDNLQFTSSKPKKLKADEAYKPPEIVTMTNTGNLRFKIKYSRRPLKESKFKKGIMVEVRDENEGFEGAWFIGTIVSSVGKDRFLVEFRDLITDDGTHQLLKEEVHENFIRPCPPEVPSVSSFKQFQEVDAWYNDAWWEGVVLEVVNSRESLVSFIHKDVLRVENSKLRPHQDWFDGKWVMASKESSELTKKFGDVMSKAKSFTGNKIILKCLKSHEPEPEKVPRVLMSSCRNTSIKFASHLYKGAKVEVTSDEEGYQGAWYTAIVVNSLQNGKYVVEYLTLKTDDLTEQLKEEADASNIRPVPPDIQRRRRYALRERVDAWYNDGWWEGQVCGFSGYKYRVYFWPTKEELEFEQCHLRPHQEWIDGRWVHAPFVQGF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242047g00007 533 Pfam Agenet domain 79 140 IPR008395 -
Stsc242047g00007 533 Pfam Agenet domain 400 460 IPR008395 -
Stsc242047g00007 533 Pfam Agenet domain 211 270 IPR008395 -
Stsc242047g00007 533 MobiDBLite consensus disorder prediction 1 22 - -
Stsc242047g00007 533 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 1 186 - -
Stsc242047g00007 533 CDD Tudor_Agenet_AtDUF_rpt1_3 399 460 - -
Stsc242047g00007 533 CDD Tudor_Agenet_AtDUF_rpt2_4 474 515 - -
Stsc242047g00007 533 Gene3D - 389 466 - -
Stsc242047g00007 533 CDD Tudor_Agenet_AtDUF_rpt2_4 282 325 - -
Stsc242047g00007 533 CDD Tudor_Agenet_AtDUF_rpt1_3 206 270 - -
Stsc242047g00007 533 SMART agenet_At_2 395 463 IPR014002 -
Stsc242047g00007 533 SMART agenet_At_2 466 521 IPR014002 -
Stsc242047g00007 533 SMART agenet_At_2 276 331 IPR014002 -
Stsc242047g00007 533 SMART agenet_At_2 204 273 IPR014002 -
Stsc242047g00007 533 SMART agenet_At_2 74 145 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242047g00007 Stsc-Chr242047 20959 23673 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242047g00007 407 519 PHD Transcription Factor Family AT5G58610 29.104 1.72e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242047g00007 - - adu:107483399 900.197