Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242047g00006 ATGCGGTGTCGTTTTGGGAGGACAACGACGACAATGGGAAGACGGAGCGTGCCGTTGTTGAACAATGATGACAATCTCCAATTTACATCAAGCAAGCCAAAGAAACTCAAAGCTGATGAAGCCTATAAGGAGCAGCCACCTGAGATTGTGACGATGACAAATACAGGAAATTTAAGATTTAAAATCAAATATAGCAGGAGACCATTAAAAGAGTCAAAGTTTAAGAAAGGGATAATGGTGGAAGTCAGGGATGAGAATGAAGGTTTTGAGGGTGCTTGGTTCATTGGTACTATTGTTAGCTCAGTAGGTAAAGACAGGTTTCTCGTAGAATTTAGGGACCTCATAACAGATGATGGAACTCATCAGCTGTTGAAAGAAGAAGTCCATGAAAATTTTATTAGGCCCTGTCCACCTGAAGTTCCTTCTGTTAGTTCTTTCAAACAGTTTCAAGAGGTTGATGCATGGTATAATGATGCTTGGTGGGAAGGCGTGGTTCTTGAAGTGGTAAATAGCAGAGAGAGTTTAGTTTCTTTCATTCACAAAGATGTATTGAGAGTTGAAAATTCCAAGTTAAGGCCTCATCAGGATTGGTTTGATGGAAAATGGGTCATGGCATCTAAGGAGTCAAGTGAGCTGACAAAGAAATTTGGAGATGTGATGTCAAAAGCCAAGAGTTTCACTGGAAATAAAATAATCTTGAAATGCCTGAAATCTCACGAGCCAGAGCCGGAAAAGGTGCCAAGAGTTCTAATGTCGAGTTGTAGAAACACCAGCATCAAATTTGCATCGCATTTATATAAAGGTGCAAAGGTAGAAGTCACAAGTGATGAAGAAGGTTATCAAGGTGCCTGGTACACCGCCATCGTTGTTAACTCTTTACAGAATGGCAAGTATGTGGTGGAGTATCTCACCCTGAAAACTGACGACTTAACTGAACAACTGAAAGAGGAAGCAGATGCTTCAAATATCAGGCCAGTTCCACCAGACATTCAACGTCGCCGTCGCTATGCGCTGCGCGAACGCGTTGACGCTTGGTACAACGATGGATGGTGGGAAGGTCAGGTATGCGGTTTCTCTGGCTACAAGTATAGGGTTTACTTTTGGCCTACAAAGGAGGAGCTGGAATTTGAACAATGTCATCTAAGGCCTCATCAAGAATGGATTGATGGAAGATGGGTACATGCTCCTTTTGTACAAGGTTTTTGA 1206 0.4221 MRCRFGRTTTTMGRRSVPLLNNDDNLQFTSSKPKKLKADEAYKEQPPEIVTMTNTGNLRFKIKYSRRPLKESKFKKGIMVEVRDENEGFEGAWFIGTIVSSVGKDRFLVEFRDLITDDGTHQLLKEEVHENFIRPCPPEVPSVSSFKQFQEVDAWYNDAWWEGVVLEVVNSRESLVSFIHKDVLRVENSKLRPHQDWFDGKWVMASKESSELTKKFGDVMSKAKSFTGNKIILKCLKSHEPEPEKVPRVLMSSCRNTSIKFASHLYKGAKVEVTSDEEGYQGAWYTAIVVNSLQNGKYVVEYLTLKTDDLTEQLKEEADASNIRPVPPDIQRRRRYALRERVDAWYNDGWWEGQVCGFSGYKYRVYFWPTKEELEFEQCHLRPHQEWIDGRWVHAPFVQGF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242047g00006 401 Pfam Agenet domain 268 328 IPR008395 -
Stsc242047g00006 401 Pfam Agenet domain 79 138 IPR008395 -
Stsc242047g00006 401 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 265 394 - -
Stsc242047g00006 401 SMART agenet_At_2 263 331 IPR014002 -
Stsc242047g00006 401 SMART agenet_At_2 72 141 IPR014002 -
Stsc242047g00006 401 SMART agenet_At_2 334 389 IPR014002 -
Stsc242047g00006 401 SMART agenet_At_2 144 199 IPR014002 -
Stsc242047g00006 401 CDD Tudor_Agenet_AtDUF_rpt1_3 267 328 - -
Stsc242047g00006 401 CDD Tudor_Agenet_AtDUF_rpt2_4 150 193 - -
Stsc242047g00006 401 CDD Tudor_Agenet_AtDUF_rpt2_4 342 383 - -
Stsc242047g00006 401 Gene3D - 256 334 - -
Stsc242047g00006 401 CDD Tudor_Agenet_AtDUF_rpt1_3 74 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242047g00006 Stsc-Chr242047 20959 23673 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242047g00006 275 387 PHD Transcription Factor Family AT5G58610 29.104 9.60e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242047g00006 - - adu:107483399 670.233