Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242046g00007 ATGCTTTATTCTATCACCTTATCAAATTTTCTTTTTGCTTATGCAGTGAAGGCTTTCCCGAAAGATGATCCTACTAAACCTTGCAGACTTACTGCCTTCCTGGGTTACAAGGCTGGAATGACCCACATTGTTAGAGAAGTTGAGAAACCTGGATCAAAGCTTCATAAAAAGGAGACATGTGAGGCTGTTACCATCATTGAGACCCCTCCATTGGTGGTTGTTGGAGTTGTGGGATATGTGCAGACACCTCGTGGTCTTCGTACTCTGAATACCGTTTGGGCTCAGCATTTAAGTGAGGAAGTCAAGAGGCGATTTTACAAGAACTGGTGCAAATCCAAAAAGAAGGCGTTTACCAAGTATTCAAAAAAATATGAATCTGAGGAAGGGAAGAAAGATATTGAATCCCAACTTGAGAAATTGAAAAAATATGCAACTGTCATTCGCATTTTGGCTCATACCCAGATAAGGAAGATGAAGGGTCTAAAGCAGAAGAAGGCACATTTGATGGAGATCCAAGTCAATGGTGGGACTATTGCGCAGAAAGTAGACTATGCTTATGGCTTCTTTGAGAAGCAAATCCCAGTTGATGCTGTTTTCCAAAAAGATGAGATGATAGACATCATTGGCGTGACGAAGGGTAAAGGTTATGAAGGTGTTGTAACTAGATGGGGTGTCACTCGTCTTCCACGTAAGACACACAGGGGTCTAAGGAAGGTTGCTTGTATTGGTGCTTGGCACCCTGCCCGTGTTTCTTTCACAGTGGCTAGGGCTGGGCAGAATGGATATCATCACCGAACAGAGTTGAATAAAAAGATCTACAAGCTTGGGAAGTCAGGTCAGGAATCACATACTGCCATCACTGAATTTGACAGGACGGAGAAGGAGATTACACCTATGGGTGGATTTCCTCACTATGGTGTGGTAAAGGATGATTATATTATGGTCAGGGGATGCTGTGTTGGACCTAAAAAGCGGGTTCTGACTCTTCGTCAGTCACTATTGAAGCAGACTTCTCGTGTGGCTCTTGAGGACATCAAGCTTAAGTTCATAGACACCTCTTCCAAGTTTGGACATGGTCGTTTCCAGACCACTCAAGAGAAGCAGAAGTTTTTCGGTCGCTTGAAGGCCTGA 1131 0.4359 MLYSITLSNFLFAYAVKAFPKDDPTKPCRLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVQTPRGLRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYSKKYESEEGKKDIESQLEKLKKYATVIRILAHTQIRKMKGLKQKKAHLMEIQVNGGTIAQKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKSGQESHTAITEFDRTEKEITPMGGFPHYGVVKDDYIMVRGCCVGPKKRVLTLRQSLLKQTSRVALEDIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242046g00007 376 FunFam 60S ribosomal protein L3 70 194 - -
Stsc242046g00007 376 FunFam Ribosomal protein L3 252 376 - -
Stsc242046g00007 376 ProSitePatterns Ribosomal protein L3 signature. 199 222 IPR019926 -
Stsc242046g00007 376 SUPERFAMILY Translation proteins 15 357 IPR009000 -
Stsc242046g00007 376 FunFam 60S ribosomal protein L3 213 261 - -
Stsc242046g00007 376 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 16 371 IPR045077 GO:0003735|GO:0005840|GO:0006412
Stsc242046g00007 376 Gene3D Translation factors 31 372 - -
Stsc242046g00007 376 Pfam Ribosomal protein L3 15 357 IPR000597 GO:0003735|GO:0005840|GO:0006412
Stsc242046g00007 376 Gene3D - 70 194 - -
Stsc242046g00007 376 Gene3D Ribosomal protein L3, domain 3 15 261 IPR044892 -
Stsc242046g00007 376 FunFam 60S ribosomal protein L3 31 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242046g00007 Stsc-Chr242046 25716 28003 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242046g00007 16 374 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 85.237 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242046g00007 K02925 - jre:109011404 677.167