Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242046g00006 ATGTCTCACAGGAAGTTCGAGCACCCGAGACACGGTTCTCTTGGCTTTCTTCCAAGGAAGCGAGCTTCTCGTCATCGTGGAAAAGTGAAGGCTTTCCCGAAAGATGATCCTACTAAACCTTGCAGACTTACTGCCTTCCTGGGTTACAAGGCTGGAATGACCCACATTGTTAGAGAAGTTGAGAAACCTGGATCAAAGCTTCATAAAAAGGAGACATGTGAGGCTGTTACCATCATTGAGACCCCTCCATTGGTGGTTGTTGGAGTTGTGGGATATGTGCAGACACCTCGTGGTCTTCGTACTCTGAATACCGTTTGGGCTCAGCATTTAAGTGAGGAAGTCAAGAGGCGATTTTACAAGAACTGGTGCAAATCCAAAAAGAAGGCGTTTACCAAGTATTCAAAAAAATATGAATCTGAGGAAGGGAAGAAAGATATTGAATCCCAACTTGAGAAATTGAAAAAATATGCAACTGTCATTCGCATTTTGGCTCATACCCAGATAAGGAAGATGAAGGGTCTAAAGCAGAAGAAGGCACATTTGATGGAGATCCAAGTCAATGGTGGGACTATTGCGCAGAAAGTAGACTATGCTTATGGCTTCTTTGAGAAGCAAATCCCAGTTGATGCTGTTTTCCAAAAAGATGAGATGATAGACATCATTGGCGTGACGAAGGGTAAAGGTTATGAAGGTGTTGTAACTAGATGGGGTGTCACTCGTCTTCCACGTAAGACACACAGGGGTCTAAGGAAGGTTGCTTGTATTGGTGCTTGGCACCCTGCCCGTGTTTCTTTCACAGTGGCTAGGGCTGGGCAGAATGGATATCATCACCGAACAGAGTTGAATAAAAAGATCTACAAGCTTGGGAAGTCAGGTCAGGAATCACATACTGCCATCACTGAATTTGACAGGACGGAGAAGGAGATTACACCTATGGGTGGATTTCCTCACTATGGTGTGGTAAAGGATGATTATATTATGGTCAGGGGATGCTGTGTTGGACCTAAAAAGCGGGTTCTGACTCTTCGTCAGTCACTATTGAAGCAGACTTCTCGTGTGGCTCTTGAGGACATCAAGCTTAAGTTCATAGACACCTCTTCCAAGTTTGGACATGGTCGTTTCCAGACCACTCAAGAGAAGCAGAAGTTTTTCGGTCGCTTGAAGGCCTGA 1170 0.4479 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVQTPRGLRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYSKKYESEEGKKDIESQLEKLKKYATVIRILAHTQIRKMKGLKQKKAHLMEIQVNGGTIAQKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKSGQESHTAITEFDRTEKEITPMGGFPHYGVVKDDYIMVRGCCVGPKKRVLTLRQSLLKQTSRVALEDIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242046g00006 389 Gene3D Translation factors 44 385 - -
Stsc242046g00006 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Stsc242046g00006 389 FunFam 60S ribosomal protein L3 44 143 - -
Stsc242046g00006 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Stsc242046g00006 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Stsc242046g00006 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Stsc242046g00006 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 384 IPR045077 GO:0003735|GO:0005840|GO:0006412
Stsc242046g00006 389 FunFam Ribosomal protein L3 265 389 - -
Stsc242046g00006 389 Gene3D - 83 207 - -
Stsc242046g00006 389 FunFam 60S ribosomal protein L3 83 207 - -
Stsc242046g00006 389 FunFam 60S ribosomal protein L3 1 78 - -
Stsc242046g00006 389 MobiDBLite consensus disorder prediction 1 35 - -
Stsc242046g00006 389 FunFam 60S ribosomal protein L3 226 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242046g00006 Stsc-Chr242046 25716 29780 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242046g00006 1 387 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 86.047 0.0 700