LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc242045g00001	ATGCCTCCAAAGAAGAAGAAGAACAATGCTTCATCATCTTCTTCTTCTACTTCAAAGAAGCATAACCCTCAACCTTCCAAGTTTGGCATCCAGCACTTCTTCGATCGCCACACACAGAACAACGCTCTCCTTGCCTCCCAAAAGCTCCAAACCAACAATGCTTCCAACTCTGCTGCTAAACCAGTTTCTAATCCTCTCCCGGCCCAAAGGAGTGACCTGAGTTCCAGCACCGCTGTGCAGGTGACTCCCCAACTGTCGCCGCGAAAACCTAGCAATGGCAAGAGTAATACCAGTTATAATGGTAACGATGATAATAGAAGTAACAATGGACTGTCCCAGAATACTCCTACGGAGAATTCGGTGGTGACGTTTGTGAATGAGATGGAAGATAGCACGTTTGAGGTGTCCCCAGAGATTTCTAAAGCTATGCCACTTAAACGCTTCAAATTCTCACCTGGAATGTTTATAAAGCAGACTCAAGATTATGGGGTTGATGAGGTCACATGGAAGATATCTCCAGTCAATGAAAGACTCCAAGCTGTTTCTAAACATGTGCCAAATGTTATTAAAGAGTTGGCTGACTCTTCGAGACTCAACTTGTTGCCATTTCGTAGCTGTTCAGAAGATAAGACTTTTCTGGATAAAGAGGACAAGGTTGACGAATTGCTTACTTCACCAACTCCCAAGGCTTCTGCAAAAGTCCTACCTTCAATGAGTAAATTAGGCATGAAAAGGATAAACCCAGAACAAAGTGTGGATTTTGACACCAATCCAACTACTCTGAGCTACTCTGGATTAGCTAGCGGACAGAGTCCCTTCAGGACTCCACCATCTTTGTCTCATTGCCCGGATAAGATGCATCCTGTTAATGATATTCAATGCACTGTACCTTCTGATCAACTTTATCTCAGACAGCACAAAAAGACTTTGCTTGAACTGTTAGATCAAGTTGAAGATGCCATTGCTGTTGATGATGCTATTGTTTGTAACAATGGAACTGATTCTTTAAAATCTTGTGACGACATTGCTGATGAGATCCCTGTTAGAGCCGACCATGCTGTAGAAAGGACAAGATCACTTATATCTAAACAGGAGGTGGTTGCTGTTTCTAGTTCTAATTATTTGGTTTTGCAGGTGTCTGAAAATTGTAGGTCTGCTGATTCATCTGCTGCTGATGCTCGATCCCCATACAAGGTGCTTCGTATACTAAATGAGCAAACTGGAGAAGAGCGGACTGTAAACTTGAGGGATGAGTGGTTTTCCAGTGTAATTGCTCCTGGAGATACTGTAAACATAATTGGTCAATTTAATGAAGGAAGAAGTTGTGATATAAACCATGATAATAATATCTTGATTGTGCACCCAGACATTCTGCTGTCTGGAACAAGGGTTGCTGGCAGTTTTGGTTGCCCTAGGAGAACTGTCTTAGATGAGAGGCTAAAAGGCAATGAGTACTCTACTGCAGCATTGACTGGAACCTTGCTTCACCAAATTTTTCAGGCTGGGCTTACAGAAGACAATCCATCTATTGACTTCTTGGAAGGTTACGCAGAAGTGGTATTACTTAGGAACATTGAGAGTCTGTATGCTTGTGGAGTAAATGAAAGTGATGTTTGGAAAACCTTGATTAATGCTGTCCCGAGAATACTGAGTTGGATTTTACGGTTCACAAATAAGGAGGAAAATCAAGATCATAATGTTTGCTTCGGATTTCAGGACAGGGCTAAGAAAGTTGGCATATCTGAGGTAATTGATATTGAAGAGATGGCATGGGCTCCTAAATATGGTTTGAAAGGGATGATTGATGCTTCAGTCAGAGTGGCAGTACAATCAACAAATGATGAACTAGAGGAGAAGATTATGCCAGTAGAGTTCAAAACTGGGAAAGCACCAGCTAGCCAGTCATCAGCAGAACACAATGCTCAAGTAATCTTATACACTCTTCTGATGTCTGAAAGGTATCAAAACAATATTGATTCTGGTCTTCTATATTATCTCCAATCAGATCAGACACAGGGCATTGTGGCTCAAAGATCTGACTTAGTTGGCCTTATAATGCGACGAAACGAGCTAGCAAGTGACATTCTGAAGGCATTAACCTTGCAACAACTTCCACCAATGTTACAGAGTCCTGGCATTTGCAGAGGTTGTCGCCATCTTAATGTTTGTAGCATTTATCACAAGGCTCATGGTGGAAGCACAAAGAGCAGTGGATTGGACGATGTATTTGATTCTCTTACTAATCACCTTACATCTTCTCATTCCAAGTTCCTCTGCCATTGGGATCGGCTGATTGACTTGGAAGCTAAGGAGACTGAGCTTTTAAGGAAAGAGATGTGGCGATCACATAGTTTAAAGGCTCCAAACTGTGGTAGCCTTTCTTCAATTGTTCTCGATGCTTCATATGGGATTCCTCACCAGAAATCTCTCAAAGATAATCGCTTTGTTTATCGTTTTGTAAGACAAGAAAGTTGTCCCTCTGGAGTTTCTGATAGCGATCACTGTAGTACCTATTCAACAAATTTAGATCTCACACTTCGAAGTGGAGACTTTGTGATATTGAGTAATGAGTATAGCGGGCAAACTGTTGCAAAAGGGGTGATCTCAGATATTAGCCAGATTCATGTATCTGTTTCCTTTTCAAAACGCTTACGAATTCCAGGAAGATGCTCCACTATACATGATCTCCTTCAACAGGTTTGGAGAATTGACAAGGATGAATTTGCGACTTCATTTGCAATTATGAGGTTTAATCTTGGGCAACTTTTTCTACAAAATGATCGGAGTACTCATCTGCGGAGGATGATTGTTGACCTTGAGGCTCCTAGATTTGACTGTGAATCTATAGTCAGCCAGGACCCCGCAATATCATATGTACGGTCAAAGAAATCTTTGAATGATGACCAATGTAAAGCAATTCTCAAGATACTTGCAGCAAAAGATTATGCGCTTATATTAGGAATGCCTGGAACAGGGAAGACTTCTACCTTGGTTCATGCTGTGAAAGCCTTGTTGGAAAGGGGCTCTTCCATTTTGCTGACAGCCTATACAAACTCTGCGGTTGATAATTTACTCATGAAATTAAAAGCACAGGATGTTGATTTTGTTCGCATTGGAAGACCAGAAGCAGTGCATGAGGTGGTCAGAGGACACTGCCTTTCAGCAACAAATATACGAAATGTTGAAGATATCAAAATAAGGTTAGGTCAAGTCAGAGTTGTTGCAGTTACTTGTCTTGGCATTTCCAGTCCCTTGCTTGCTAACATGAGATTCGATGTTTGCATTATGGATGAAGCTGGACAGACAACCCTACCAGTGTCCTTGGGCCCTCTAACATTTGCTTCGATGTTTGTACTTGTTGGGGATCATTATCAATTGCCTCCACTTGTCCAGAGCACAGAGGCCCAAGAGAATGGCATGGGCATAAGTTTGTTTTGTAGGCTCTCTGAAACACATCCAGAGGCAATTGCAGAATTACGGAGCCAGTATCGGATGCGTCAAGGCATTATGGACCTGTCAAATGCCTTGATATATGGTGACAGGTTGAGGTGTGGTTCATCTGAAATAGCTAATGCAACACTTGGGTTTTCTAATTTAAAATGTGGCCTACCTTGGCTAGAAGATGTTTTAAATCCTTCCAGGCCAGTGATTTTTATTGATACTGACATGTTACCTGCTTTGGAAGTAAGAGATCAGAAGACTGTCAATAACCCAGTTGAAGCTCAAATAATTGCCAAGGTTGCAATGGAATTGGTTAAAAATGGAGTCATAGGAGAGCAGATTGGTGTTATTACCCCTTATAATTCACAGGCAAACCTCATCCGGAAAGCAGCTTCCGACACTTCGATGGAGATACATACTATTGACAAATATCAGGGTAGAGATAAGGATTGCATATTAGTATCTTTTGTAAGATCTAGTGAAAACCCAATGAACCTTGCTGCTTCTCTGCTTGGAGACTGGCATAGGATAAATGTCGCTCTCACTCGCGCCAGAAAAAAGTTGATCATGGTGGGGTCTCGTAGAACTCTTTCAAAGGTTCCGCTACTGAAGCTTCTCATTAAGAATGTGGAGGAACAATGTGGAATTATAAGCGTTTCTAAGAAGGATATCGTTCCAAAAGGTCAGCTCCGAAGATGTTCTGAAATGGGTTGA	4155	0.4166	MPPKKKKNNASSSSSSTSKKHNPQPSKFGIQHFFDRHTQNNALLASQKLQTNNASNSAAKPVSNPLPAQRSDLSSSTAVQVTPQLSPRKPSNGKSNTSYNGNDDNRSNNGLSQNTPTENSVVTFVNEMEDSTFEVSPEISKAMPLKRFKFSPGMFIKQTQDYGVDEVTWKISPVNERLQAVSKHVPNVIKELADSSRLNLLPFRSCSEDKTFLDKEDKVDELLTSPTPKASAKVLPSMSKLGMKRINPEQSVDFDTNPTTLSYSGLASGQSPFRTPPSLSHCPDKMHPVNDIQCTVPSDQLYLRQHKKTLLELLDQVEDAIAVDDAIVCNNGTDSLKSCDDIADEIPVRADHAVERTRSLISKQEVVAVSSSNYLVLQVSENCRSADSSAADARSPYKVLRILNEQTGEERTVNLRDEWFSSVIAPGDTVNIIGQFNEGRSCDINHDNNILIVHPDILLSGTRVAGSFGCPRRTVLDERLKGNEYSTAALTGTLLHQIFQAGLTEDNPSIDFLEGYAEVVLLRNIESLYACGVNESDVWKTLINAVPRILSWILRFTNKEENQDHNVCFGFQDRAKKVGISEVIDIEEMAWAPKYGLKGMIDASVRVAVQSTNDELEEKIMPVEFKTGKAPASQSSAEHNAQVILYTLLMSERYQNNIDSGLLYYLQSDQTQGIVAQRSDLVGLIMRRNELASDILKALTLQQLPPMLQSPGICRGCRHLNVCSIYHKAHGGSTKSSGLDDVFDSLTNHLTSSHSKFLCHWDRLIDLEAKETELLRKEMWRSHSLKAPNCGSLSSIVLDASYGIPHQKSLKDNRFVYRFVRQESCPSGVSDSDHCSTYSTNLDLTLRSGDFVILSNEYSGQTVAKGVISDISQIHVSVSFSKRLRIPGRCSTIHDLLQQVWRIDKDEFATSFAIMRFNLGQLFLQNDRSTHLRRMIVDLEAPRFDCESIVSQDPAISYVRSKKSLNDDQCKAILKILAAKDYALILGMPGTGKTSTLVHAVKALLERGSSILLTAYTNSAVDNLLMKLKAQDVDFVRIGRPEAVHEVVRGHCLSATNIRNVEDIKIRLGQVRVVAVTCLGISSPLLANMRFDVCIMDEAGQTTLPVSLGPLTFASMFVLVGDHYQLPPLVQSTEAQENGMGISLFCRLSETHPEAIAELRSQYRMRQGIMDLSNALIYGDRLRCGSSEIANATLGFSNLKCGLPWLEDVLNPSRPVIFIDTDMLPALEVRDQKTVNNPVEAQIIAKVAMELVKNGVIGEQIGVITPYNSQANLIRKAASDTSMEIHTIDKYQGRDKDCILVSFVRSSENPMNLAASLLGDWHRINVALTRARKKLIMVGSRRTLSKVPLLKLLIKNVEEQCGIISVSKKDIVPKGQLRRCSEMG	1384

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc242045g00001	1384	Gene3D	-	460	724	IPR011604	-
	Stsc242045g00001	1384	CDD	SF1_C_Upf1	1165	1358	IPR047187	-
	Stsc242045g00001	1384	FunFam	DNA replication helicase Dna2	899	1162	-	-
	Stsc242045g00001	1384	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	963	1349	IPR027417	-
	Stsc242045g00001	1384	Gene3D	-	901	1162	IPR027417	-
	Stsc242045g00001	1384	Pfam	AAA domain	1068	1132	IPR041677	GO:0004386
	Stsc242045g00001	1384	Pfam	AAA domain	965	1055	IPR041677	GO:0004386
	Stsc242045g00001	1384	PANTHER	DNA2/NAM7 HELICASE FAMILY	141	1360	IPR045055	-
	Stsc242045g00001	1384	MobiDBLite	consensus disorder prediction	1	117	-	-
	Stsc242045g00001	1384	FunFam	DNA replication helicase Dna2	562	724	-	-
	Stsc242045g00001	1384	CDD	DNA2_N-like	460	695	-	-
	Stsc242045g00001	1384	Pfam	Domain of unknown function DUF83	612	724	IPR022765	-
	Stsc242045g00001	1384	CDD	DEXXQc_DNA2	964	1164	IPR026851	GO:0017116
	Stsc242045g00001	1384	MobiDBLite	consensus disorder prediction	33	117	-	-
	Stsc242045g00001	1384	Pfam	AAA domain	1142	1341	IPR041679	-
	Stsc242045g00001	1384	Gene3D	-	1163	1370	IPR027417	-
	Stsc242045g00001	1384	FunFam	DNA replication helicase	1163	1375	-	-
	Stsc242045g00001	1384	MobiDBLite	consensus disorder prediction	1	25	-	-
	Stsc242045g00001	1384	Pfam	DNA replication factor Dna2	405	607	IPR014808	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc242045g00001	Stsc-Chr242045	5076	21192	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc242045g00001	1	1106	Core DNA Replication Machinery Family	AT1G08840	53.715	0.0	1088

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc242045g00001	K10742		-	gmx:100799415	1753.03