Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242041g00005 ATGGACCGTAGTGCCTCAAAGGCACTTGATGATGACACTGCCATGTTCATCAACATGTCACATGATCTTAAGGAAGAAGGTAACAGGCTATATCAGAAGAAGGATCATGAAGGTGCCATGTTGAAGTTTGAGAAGGCTTTGAAGCTCTTACCGAAGAATCACATCGATGTAGCACACCTTCACACGAGTATGGCTGTCTGTTACATGCAAATGGGGCTAGGTGAGTACCCTCGCGCCATCAATGAATGCAGTTTGGCTTTAGAAGTGTCACCTAGATATAGCAGGGCTCTGTTGAAGAGGGCAAAGTGCTATGCCGCGTTGAATCGGTTGGATTTGGCAATGAAGGATGTTAGGATTGTTTTGAATTGGGAGCCTAATAACCTTACAGCATTAGAGATACAGGATAGTTTGAGAATCACAATGGAAGAGAAGGGTATCACTATTGATGAGACTGAGATTGCTTTGGCTACAATGGCGGAGCCTCCGGGCACACGGTTGCGGAAAGTGGTGAGGGAGAAGCTAAAGAAGAAGAAAGGTCCTCACCACCATAAAGGTGAGGACAAGATGGAGCATGATAAGGAGGTTGTGCACAAGGAGGTGCTGCAAAAGGAGCATGTTCAGGAGAATGTGAAGAGTCATGTTAAGGACAAGGAGAAGGAAATGGTCACGAACACGATTGAGAAAGAAAATTTGGAAGCGAAACTTGTTAAGAGGCGGGAAAAGGCTGTTACAAGGACAGTGAAGTTCATATATGGTGAGGATATAAGATGGGCGCAGCTTCCGGTGAATTGTAGTTTGAGGATGGTAAGGGATAAGATAAAGGAAAGGTTTCCAGGATTGAAGGGTGTCCTTGTGAAGTATAAGGACCGAGAAGGCGATTTTGTTACAATAACCAATGTTGCTGATTTAAGGCTAGCTGAAAGTTCCGGTCATGTGCTCGGCTCGATTCGACTTTATATTACAGAAGTTGATCCTTCACAGGAACCATCTTATGATGATAAAACCATGGCAAGTGAGATGCCAACTTATGTTAGCAAATCAGGTGAAGGTTTAGAGAGTGGAGCTAAGCAAAGAGGCGAGCCGGTAGCAAACCCGGCTATTACTGTGGAGGACTGGCTAGTCCAGTTTGCAAGGCTGTTCAAGAACCATGTTGGGTTTGACTCTGATGCATATCTAGATATTTATGAGGTTGGTATGAAGCTATATTCCGAAGCAATGGAGGATACTGCATCAGATGAAGAAGCTCAAGAACTGTTTGAAATCGCGGCAGATAAATTTCAAGAAATGGCAGCTTTGGCATTGTTTAATTGGGGCAATGTTCATATGTCTAGAGCAAGGAAGCGTGTCTCCTCCGCAGAAGATGGATCAAGAGAGTCTTTCGAGAATATCAAATCTGCTTATGACTGGGCTCAAAATGAGTACACAAAAGCAGAATCAAGATATGAAGAAGCCTTGAGAATCAAACCCGATTTCTACGAAGGACTTCTTGCACTCGGGTATCAGCAGTTCGAGCAAGCAAGGCTTNNNNNNNNNNGGAGTTGGACATTGGCGCGTCCGAAGAGGTTCTGCAGTTCTATAACAAGGCAGAGGATAGCATGGAGAAAGGCATGTTGA 1614 0.4418 MDRSASKALDDDTAMFINMSHDLKEEGNRLYQKKDHEGAMLKFEKALKLLPKNHIDVAHLHTSMAVCYMQMGLGEYPRAINECSLALEVSPRYSRALLKRAKCYAALNRLDLAMKDVRIVLNWEPNNLTALEIQDSLRITMEEKGITIDETEIALATMAEPPGTRLRKVVREKLKKKKGPHHHKGEDKMEHDKEVVHKEVLQKEHVQENVKSHVKDKEKEMVTNTIEKENLEAKLVKRREKAVTRTVKFIYGEDIRWAQLPVNCSLRMVRDKIKERFPGLKGVLVKYKDREGDFVTITNVADLRLAESSGHVLGSIRLYITEVDPSQEPSYDDKTMASEMPTYVSKSGEGLESGAKQRGEPVANPAITVEDWLVQFARLFKNHVGFDSDAYLDIYEVGMKLYSEAMEDTASDEEAQELFEIAADKFQEMAALALFNWGNVHMSRARKRVSSAEDGSRESFENIKSAYDWAQNEYTKAESRYEEALRIKPDFYEGLLALGYQQFEQARLXXXXSWTLARPKRFCSSITRQRIAWRKAC 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242041g00005 537 PANTHER PROTEIN CLMP1 4 509 IPR044517 -
Stsc242041g00005 537 Gene3D Tetratricopeptide repeat domain 387 514 IPR011990 GO:0005515
Stsc242041g00005 537 SMART tpr_5 94 127 IPR019734 GO:0005515
Stsc242041g00005 537 SMART tpr_5 457 491 IPR019734 GO:0005515
Stsc242041g00005 537 SMART tpr_5 20 53 IPR019734 GO:0005515
Stsc242041g00005 537 SMART tpr_5 58 93 IPR019734 GO:0005515
Stsc242041g00005 537 Coils Coil 214 234 - -
Stsc242041g00005 537 SUPERFAMILY TPR-like 21 507 IPR011990 GO:0005515
Stsc242041g00005 537 ProSiteProfiles TPR repeat profile. 20 53 IPR019734 GO:0005515
Stsc242041g00005 537 Gene3D Tetratricopeptide repeat domain 18 146 IPR011990 GO:0005515
Stsc242041g00005 537 Pfam PB1 domain 244 320 IPR000270 GO:0005515
Stsc242041g00005 537 CDD PB1 246 320 - -
Stsc242041g00005 537 ProSiteProfiles PB1 domain profile. 244 323 IPR000270 GO:0005515
Stsc242041g00005 537 SMART PB1_new 244 323 IPR000270 GO:0005515
Stsc242041g00005 537 SUPERFAMILY CAD & PB1 domains 244 331 - -
Stsc242041g00005 537 Gene3D - 242 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242041g00005 Stsc-Chr242041 34636 38318 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242041g00005 10 143 Calmodulin-binding Proteins AT3G25230 27.972 5.76e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242041g00005 K26538 - qsa:O6P43_015720 638.262