LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc242041g00004	ATGGCCAACTATAGATTTCTTCTTTTCTTATATGCCTATTTCATCATAGAATCCGTAGCAAGCAGCGGTAATGATGATAATAGGAGTCTTCACATTGTATACATGGGATCACTTCCAAAGGGAGATTATTCTCCAACCTCCCACCACCTTAGTATGCTGCAACAAACTACTAATGATAACGATGCAAAAAATCACATTCCTAGAAGTTATCATAGGAGTTTTAATGGTTTTGCTGCAATGATTACTGATAAGCAAAGAGAAATGCTCTCAAAAATGGAAGGAGTGGTTTCGGTTTTCCCAAGCAGAACACTCCAACTACAAACAACAAGATCTTGGGACTTCATGGGGTTCCAAGAATCGACACAAAGAAACAGTACTGGTGAGAGTGATGTTATAATCGGAGCTATAGATAGCGGAATATGGCCAGAATCAGAAAGCTTCAACGATCATGGTTTCTCTCCTATTCCAAAAAAGTGGAAAGGAGTATGCGAAGGCGGCAAAAACTTCACATGCAACAATAAAATCATTGGTGCACGACACTATCTAAAAGGGGAAGGCTCTGCAAGAGACGTTGTTGGGCATGGAACCCACACGGCCTCAACTACGGCGGGGAATAAAGTTTCGGGCGCAAGCTTCTATGGGATTGCTGGAGGAGTTGCAAGAGGAGGCGCCCCATCGGCAAGAATTGCTGTTTATAGTGCGTGCAGTAATGAAGATTGTTCAAGTGATAACATATTGGCTGCTTTTGATGATGCCATTGCTGATGGTGTGGACCTCATTACAATTTCGATTGGCGCAAATCTCCCAGTTCCCTTTGATACAGACACCATAGCAATTGGATCTTTTCATGCAATGGAAAAAGGGATTCTTACCATAAATTCTGCAGGTAACTCTGGTCCTAAAGGTTTAACATTTAGTGTATCACCTTGGTTATTCAGTGTTGCAGCTACCACCATGGATCGTAGAATCATCGATAAAGTTTTGCTTGGTAATGGATTAACACTCACGGGGAGGTCAATAAATGCGTTTGCATCAAATGGGACAAAGATTCCAATGGTCCATGGAATGTCTGCTTCAAATCTACATTGTCCATCAATTGAGAAAGCTGAATCTTGTTCTGATATTTGTATGGATCCCGAACGCATAAAAGGAAAAATCCTCTTGTGTAAAACTGTGTATGGAAATGTAGCAGCTATTGCATATCATGCATTGGGCATCATTTTCATGTCTAATGATCTTGAGGCTAGTGTAGTTTCTTATCCTTCATTAAGCATAGATTCAAAGGCTTATGATCTTGCTTTGGCTTATGCAAATTCCACTAATACCCCTCAAGCTGAAATTTTGAGTAGTGCAACCTTTATAAACGAAACTGCTCCTGTTGTTGCTGATTTCTCTTCTAGAGGACCCAATTCTAATATTCTAGAGATTATGAAGCCAGACATAAGTGCTCCTGGTGTAGAAATTTTGGCTGCTTTTTCACCTCTTGCATCACCATCTGGAGATTTAAATGACGTGAGATCAGTGAAATACAGCATACTTTCTGGAACTTCAATGTCATGCCCTCATGTTGCTGGCATAGCTGCATATGTTAAGGCTTTTCATCCTGATTGGTCTCCGGCAGCTATAAAGTCTTCTATCATGACGACTGCAAAACCAATGAATGAAACTGATGATAAAGACAAAGAATTTGCTTATGGATCAGGGTTTGTGGATCCAATTAGAGCCATAAATCCCGGTCTAGTTTTTGATCTTTCTAAAGATGACTATTTGAATTTACTTTGCAGTACTGGATATAACACAATTCAAGTTCGACAAATATCAGGTGATAATAGCACCTCTTGTCCTTCATCATCTCAGTCAATGGCGAAAGATTTTAATTATCCTTCAATGGTGACTCCAGCTCAACCAATGAAACCATTTATGGTTAATTTCACAAGAGCAGTCACAAATGTTGGATTTGCTAACTCTACCTATACGGCTAGTATCCAACAACATTCTGGCATGAACATCTCTATTGTGCCTAACATACTTAAGTTTAAATCTCTAAATGAGAAACAAACTTTTGTTGTTAATGTTGTTGGAGGGGAATTAAATGATAATGATAATAGCTTAGTTTCATCGTCGCTATTGTGGACCGATGGAACACATAATGTAAGGTGTCCAATTCTTGCATTTGTTCGAAAAGTATGA	2190	0.3936	MANYRFLLFLYAYFIIESVASSGNDDNRSLHIVYMGSLPKGDYSPTSHHLSMLQQTTNDNDAKNHIPRSYHRSFNGFAAMITDKQREMLSKMEGVVSVFPSRTLQLQTTRSWDFMGFQESTQRNSTGESDVIIGAIDSGIWPESESFNDHGFSPIPKKWKGVCEGGKNFTCNNKIIGARHYLKGEGSARDVVGHGTHTASTTAGNKVSGASFYGIAGGVARGGAPSARIAVYSACSNEDCSSDNILAAFDDAIADGVDLITISIGANLPVPFDTDTIAIGSFHAMEKGILTINSAGNSGPKGLTFSVSPWLFSVAATTMDRRIIDKVLLGNGLTLTGRSINAFASNGTKIPMVHGMSASNLHCPSIEKAESCSDICMDPERIKGKILLCKTVYGNVAAIAYHALGIIFMSNDLEASVVSYPSLSIDSKAYDLALAYANSTNTPQAEILSSATFINETAPVVADFSSRGPNSNILEIMKPDISAPGVEILAAFSPLASPSGDLNDVRSVKYSILSGTSMSCPHVAGIAAYVKAFHPDWSPAAIKSSIMTTAKPMNETDDKDKEFAYGSGFVDPIRAINPGLVFDLSKDDYLNLLCSTGYNTIQVRQISGDNSTSCPSSSQSMAKDFNYPSMVTPAQPMKPFMVNFTRAVTNVGFANSTYTASIQQHSGMNISIVPNILKFKSLNEKQTFVVNVVGGELNDNDNSLVSSSLLWTDGTHNVRCPILAFVRKV	729

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc242041g00004	729	PRINTS	Subtilisin serine protease family (S8) signature	514	530	IPR015500	-
	Stsc242041g00004	729	PRINTS	Subtilisin serine protease family (S8) signature	190	203	IPR015500	-
	Stsc242041g00004	729	PRINTS	Subtilisin serine protease family (S8) signature	128	147	IPR015500	-
	Stsc242041g00004	729	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	15	107	IPR037045	-
	Stsc242041g00004	729	Gene3D	Peptidase S8/S53 domain	130	589	IPR036852	GO:0004252\|GO:0006508
	Stsc242041g00004	729	Pfam	Fibronectin type-III domain	624	723	IPR041469	-
	Stsc242041g00004	729	CDD	PA_subtilisin_like	327	447	-	-
	Stsc242041g00004	729	ProSitePatterns	Serine proteases, subtilase family, serine active site.	515	525	IPR023828	-
	Stsc242041g00004	729	Pfam	Subtilase family	129	568	IPR000209	GO:0006508\|GO:0008236
	Stsc242041g00004	729	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	32	722	IPR045051	-
	Stsc242041g00004	729	SUPERFAMILY	Subtilisin-like	109	577	IPR036852	GO:0004252\|GO:0006508
	Stsc242041g00004	729	Gene3D	-	593	726	-	-
	Stsc242041g00004	729	Gene3D	-	320	454	-	-
	Stsc242041g00004	729	ProSiteProfiles	Serine proteases, subtilase domain profile.	111	576	-	-
	Stsc242041g00004	729	Pfam	Peptidase inhibitor I9	31	106	IPR010259	-
	Stsc242041g00004	729	CDD	Peptidases_S8_3	104	550	IPR034197	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc242041g00004	Stsc-Chr242041	31333	33522	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc242041g00004	3	725	Subtilisin-like Serine Gene Family	AT3G46850	52.503	0.0	739

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc242041g00004	-		-	qsa:O6P43_020998	803.127