Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242040g00002 ATGATGCTCACTTCTTCCTCTAAACTTTTCTTCCTTTCATTATTTCTTGCACTTTGCTTCATATTATATCCTATAGAAGCTACTTCTCGGCTGCCACACACAGAAGAGGAAGCTTTGAAGCAAATAGCAAACACGCTTGGCTGGGAGGACTTTAAGGACGACACAGATCCCTGCAGTGAGGGGCTTAATAGTAAGCCATTTCGCCCAACATCAGAAGTAGTTAATGTTTCATGCGATTGCTCCATTGCTAATGACACCTTTTGCCACATTGTTACCATAATTCTGAGTGCACAAAATCTTCAAGGAAAGCTCCCTCCAGAACTTGTCAAGCTGCCATACCTTCAAGAGATCAATCTCACCCGCAATTACCTTAGCGGTAATATTCCTAGAGAATGGGGTACAATGAACCTTACCAAAATTGCACTTGTTGCAAACGGACTAAGTGGTGAAATACCTAAGGAGCTATCAAGCATCACCACTCTCAAAGTTTTGTCCCTGGAATTCAATAACTTCTATGGAAATATTTCATTTCTTGGGTCTCTTCCACACCTTGAAATACTGCATCTTACCTCTAACAATTTCACTGGAGAACTGCCTGAAACATTTTCAAATTTAATCACATTAAAGGAACTGAGGATTAGTGACCTACTGAATGGACCTGAATCTAAATTCCCACCTCTCGATCATATGACAAACTTACAAACATTGATATTAAGGAGCTGCAACATTAATGATACACTACCTAAATATCTTGGAAAGTTCACAAATTTGACAACATTAGATCTTAGCTATAACAAATTAAGAGGAGAAATTCCAATTTCCCTTAGAGCGCTGCCAAATATAAATTACATATATTTAACTGGAAACTTTCTGAGTGGACAAGTGCCTGCCGAATGGACTACTAGATCCATAGATCTTTCATATAACAATTTCAGTAACTTCCCAGAGACAGTGACATGTACAGACTCTAAGATGAACTTGTTTGCGAGTTTTGCAAAAGGCAACAACACAGGACCTCTTTCTTGCGGGAAAAGCAAAGAAGTATGCTCCAAATACTATTATTCTTTCCATATAAACTGTGGTGGAAGTAGTAATATACAGAAAGGAAAGATAGTATACGAGAGTGATTCATATGATAATGGAGTATCATTTAAGGAAAGTGCTACTGGATCAAACTGGGCAATTAGCAGAACTGGTGGTGATTTCTTGGATGATGTTTATAATTACAAGCTTATCCAAGAAAATGAAACCGTACTTGACATAGTTGATGATGATGATCTTTATACAAAGGCACGTGGTTCTCCCATTTCATTGACTTACTATGGATTTTGCCTAGCGAATGGAAACTACACTGTAAATCTCCACTTTGCAGAGATCGTTTTCACCAATGGCACCACATATAAGAGCCTAGGAAGGCGTGTGTTCGATGTATACATTCAGGGAGAGCGTGTTCTAAAGGATTTCAACATTGCAAAAGAAGCAAAAGGAATTGGAAAGGCAATTATTAAAAACTTGAGTGCTTATGTGAGCAGCAATGACTTGGAGATTCGATTATATTGGGCAGGGAAAGGTACTACTGGTCTTCCATTTAGCTCACAATATGGTCCTCTTATCTCAGCAATTTCAGTCACTTCTGATCACTCACCTGATGACCACAATCACAAATCTTCAAGGCTAGTGGCTGGAATTGTTCCTTCAGCAGTGATATTTATCATTATCCTGATTCTTTGCCTACTTTGGTGGAAAGGTTGTCTAGGACATAAAACATCATTAGCAAAAGAGCTGAGAAGTTTAGATCAACAAACTGGTCTATTTTCCTTGCATCAAATTAAAGCAGCAACAAATAACTTCAATATCTCAAATAAAATTGGTGAAGGAGGCTTTGGTCCTGTTTATAAGGGTATTTTACGAGATGGCACTATAATAGCAGTGAAACAACTTTCATCTAAATCACAGCAAGGAAACCGTGAGTTCATCAATGAGATAGCCATGATCTCAGCATTGCAACATCCTTGTCTTGTTAAACTTTATGGATGCTGTGTTGAGGGAGATCAACTATTGTTGGTCTATGAATACATGGAAAACAATAGCCTTGCATATGCATTATTCGGCCCAAAAGAACATCAAATAAAATTGAATTGGCCAACGAGACACAAGATTTGTGTTGGTATTGCTAGAGGTTTGGCTTTTCTCCACGAGGAATCAAGATTGAAGATTGTTCATAGGGACATTAAGGCAACTAATGTGTTGCTTGACAAATTTTTGAATCCAAAAATATCTGATTTTGGCTTAGCAAGACTTCATGAAGAGGACGCGACTCACATTAGTACTCGAATAGCCGGGACATACGGATATATGGCACCCGAATATGCAATGCATGGTTATTTGACCGATAAAGCAGATGTTTATAGTTTTGGAATTGTTGTTCTAGAAATTGTTAGCGGAAAGGCTAACACCATTCATAGGTCAAAGGAGGAAGTGTTATATCTTCTTGATTGGGCACATTTGTTGAAAGAGAAAGGCATGCTAATGGAGCTAGTTGATCGAAGGTTAGGTTCAGATTTCAATGAAGAGGAAGTAATGGTTATGATCCAAGTAGCTATATTATGTACCAATGCGACTCCAAATCTTAGGCCTTCCATGTCTTCAGTTGTAAGCATGCTTGAAGGTGAAACCATTGTTCCAGAATTTGTTTCGGATCAAAGTGAATTAATGGATGAGATGAAGTTAGAGGCAATGCGACAATATTACTATGAAAAGGAAGAAAATAAAATGAATAATGAGGCGAAAAGTAGTGTGTCACATAATAATAATGATGTTGTTGATGATCAATGGACTGCTTCATCTTCCTCTGATCTCTATCCTATGCACATTGATTCTTCATATTATTGGGAGCAAAGAAACTAG 2907 0.3794 MMLTSSSKLFFLSLFLALCFILYPIEATSRLPHTEEEALKQIANTLGWEDFKDDTDPCSEGLNSKPFRPTSEVVNVSCDCSIANDTFCHIVTIILSAQNLQGKLPPELVKLPYLQEINLTRNYLSGNIPREWGTMNLTKIALVANGLSGEIPKELSSITTLKVLSLEFNNFYGNISFLGSLPHLEILHLTSNNFTGELPETFSNLITLKELRISDLLNGPESKFPPLDHMTNLQTLILRSCNINDTLPKYLGKFTNLTTLDLSYNKLRGEIPISLRALPNINYIYLTGNFLSGQVPAEWTTRSIDLSYNNFSNFPETVTCTDSKMNLFASFAKGNNTGPLSCGKSKEVCSKYYYSFHINCGGSSNIQKGKIVYESDSYDNGVSFKESATGSNWAISRTGGDFLDDVYNYKLIQENETVLDIVDDDDLYTKARGSPISLTYYGFCLANGNYTVNLHFAEIVFTNGTTYKSLGRRVFDVYIQGERVLKDFNIAKEAKGIGKAIIKNLSAYVSSNDLEIRLYWAGKGTTGLPFSSQYGPLISAISVTSDHSPDDHNHKSSRLVAGIVPSAVIFIIILILCLLWWKGCLGHKTSLAKELRSLDQQTGLFSLHQIKAATNNFNISNKIGEGGFGPVYKGILRDGTIIAVKQLSSKSQQGNREFINEIAMISALQHPCLVKLYGCCVEGDQLLLVYEYMENNSLAYALFGPKEHQIKLNWPTRHKICVGIARGLAFLHEESRLKIVHRDIKATNVLLDKFLNPKISDFGLARLHEEDATHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEIVSGKANTIHRSKEEVLYLLDWAHLLKEKGMLMELVDRRLGSDFNEEEVMVMIQVAILCTNATPNLRPSMSSVVSMLEGETIVPEFVSDQSELMDEMKLEAMRQYYYEKEENKMNNEAKSSVSHNNNDVVDDQWTASSSSDLYPMHIDSSYYWEQRN 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242040g00002 968 Pfam Protein tyrosine and serine/threonine kinase 618 888 IPR001245 GO:0004672|GO:0006468
Stsc242040g00002 968 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 353 546 - -
Stsc242040g00002 968 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 586 692 - -
Stsc242040g00002 968 SMART serkin_6 617 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242040g00002 968 ProSiteProfiles Leucine-rich repeat profile. 256 279 IPR001611 GO:0005515
Stsc242040g00002 968 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 85 175 - -
Stsc242040g00002 968 SUPERFAMILY Protein kinase-like (PK-like) 600 897 IPR011009 -
Stsc242040g00002 968 SUPERFAMILY L domain-like 84 326 - -
Stsc242040g00002 968 Pfam Leucine Rich Repeat 183 205 IPR001611 GO:0005515
Stsc242040g00002 968 CDD STKc_IRAK 623 890 - -
Stsc242040g00002 968 Pfam Leucine rich repeat 231 289 IPR001611 GO:0005515
Stsc242040g00002 968 Gene3D Ribonuclease Inhibitor 32 221 IPR032675 -
Stsc242040g00002 968 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 923 - -
Stsc242040g00002 968 Pfam Malectin domain 355 541 IPR021720 -
Stsc242040g00002 968 Gene3D Transferase(Phosphotransferase) domain 1 693 903 - -
Stsc242040g00002 968 Gene3D Ribonuclease Inhibitor 222 353 IPR032675 -
Stsc242040g00002 968 Gene3D - 354 547 - -
Stsc242040g00002 968 ProSiteProfiles Protein kinase domain profile. 617 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242040g00002 968 Gene3D Phosphorylase Kinase; domain 1 585 692 - -
Stsc242040g00002 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 739 751 IPR008271 GO:0004672|GO:0006468
Stsc242040g00002 968 FunFam Putative LRR receptor-like serine/threonine-protein kinase 693 900 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242040g00002 Stsc-Chr242040 17516 27507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242040g00002 27 917 Receptor kinase-like Gene Family AT1G53420 51.688 0.0 887
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc242040g00002 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242040g00002 - - gmx:100785451 1063.91