Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242037g00006 ATGGGGTGTGTGATTAGCCGAGAGGTGGAATCGGGGATCGTCTCTGAGGTGAAGGAGGAGAAGGATTTGAGTGCCGAGGTGAGCAGGAAGGTTGGTGATGTGTCTACAAGCAATACTGATGGAGGCGAGGTAGAGGTTCCGAATGGCGAGAAGCAGAGGGAAAAGGAAGAGAATGGATTTAATGATGGCGAGCAGCCTCGGAAAGCAAAGGGGGACAGAAGAAGATCGAAGCCGAATCCAAGGTTGAGTAATCCGCCTAAGAATTTGAAGGGGGAGCAAGTAGCAGCTGGGTGGCCACCGTGGCTTACAGCAGTTTGTGGGGAAGCACTTAGTGGATGGATTCCTCGAAAGGCTGATACATTTGAGAAAATTGATAAGATTGGTCAAGGAACGTATAGTAATGTGTACAAAGCTAAGGACATGTTGACTGGTAAGATCGTTGCATTGAAGAAGGTTCGATTTGACAATTTAGAACCTGAGAGTGTCAAATTCATGGCAAGAGAGATTATTATTTTGCGAAGATTGGATCATCCAAATGTTGTAAAGCTAGAAGGTTTAGTTACATCAAGAATGTCCTTGAGTTTGTATCTGGTTTTTGATTACATGGTGCATGATTTAGCCGGTCTTGCTGCAAGCCCTGACATAAAGTTTACAGAACCTCAGGTCAAATGTTACATGCATCAACTGCTATCGGGTCTTGAGCACTGTCATAATCGACATGTACTCCACCGTGATATTAAAGGATCAAATCTACTTATTGACGATAATGGAGTACTTAAGATTGCTGATTTTGGTCTTGCATCATTCTTTGATCCGAACCGCAGGCAACCCATGACTAATCGTGTAGTAACCCTTTGGTACAGACCTCTGGAGTTGCTCCTTGGTGCCACAGAATATGGTGTGGGCATTGACCTTTGGAGTGCTGGTTGCATTCTAGGAGAGTTATTGGCTGGGAAACCTATTATGCCTGGTCGTACCGAGGTGGAACAATTGCATAAGATATACAAACTTTGTGGTTCACCTTCTGATGAGTATTGGAAGAAAGCAAAGTTGCCTAATGCTACCTTATTTAAACCTAGAGAGCCATATAGGAGATGCATAAGAGAGACATTTAAAGATTTCCCCCCTTCTGCACTACCCCTTATCGACACTCTTCTTGCTATTGATCCTGCTGAACGGAAGACTGCTTCAGATGCTTTAAGAAGTGAGTTCTTTATGACGGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCAACCAAGGAAATGGATGCTAAACGACGAGATGATGAAGCAAGGAGATTAAGAGCTGCTGGAAAAGCTCATGGGGATGGTCCAAAGAAGCATCGTACACGTGAACGTACTGCAAGAGCTATGGCTGCTCCTGAAGCCAATGCTGAGCTTCAACCCAACATTGATCGAAGGCGTCTCATCACTCATGCGAATGCTAAGAGCAAGAGTGAAAAGTTCCCTCCGCCTCATGAAGACGGTCAACTCGGATACCCTTTGGGATCTTCAAACCATATTGATCCAGCTATTGTGCCAACTGATGTCTCTTTTGTTTCAACCGNNNNNNNNNNACAACTACTCAAAGGAACCATTCCAGGCATGGTCCGGTCCGATCGGCGTGCCAAAGCAGAAGAAACACAATAA 1662 0.4452 MGCVISREVESGIVSEVKEEKDLSAEVSRKVGDVSTSNTDGGEVEVPNGEKQREKEENGFNDGEQPRKAKGDRRRSKPNPRLSNPPKNLKGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREIIILRRLDHPNVVKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDDNGVLKIADFGLASFFDPNRRQPMTNRVVTLWYRPLELLLGATEYGVGIDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKAKLPNATLFKPREPYRRCIRETFKDFPPSALPLIDTLLAIDPAERKTASDALRSEFFMTEPYACDPSSLPKYPPTKEMDAKRRDDEARRLRAAGKAHGDGPKKHRTRERTARAMAAPEANAELQPNIDRRRLITHANAKSKSEKFPPPHEDGQLGYPLGSSNHIDPAIVPTDVSFVSTXXXXQLLKGTIPGMVRSDRRAKAEETQ 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242037g00006 553 PANTHER CELL DIVISION PROTEIN KINASE 119 409 - -
Stsc242037g00006 553 MobiDBLite consensus disorder prediction 1 93 - -
Stsc242037g00006 553 MobiDBLite consensus disorder prediction 423 455 - -
Stsc242037g00006 553 ProSiteProfiles Protein kinase domain profile. 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242037g00006 553 CDD STKc_CDK9_like 121 405 - -
Stsc242037g00006 553 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Stsc242037g00006 553 MobiDBLite consensus disorder prediction 12 28 - -
Stsc242037g00006 553 SMART serkin_6 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242037g00006 553 Gene3D Transferase(Phosphotransferase) domain 1 204 444 - -
Stsc242037g00006 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Stsc242037g00006 553 SUPERFAMILY Protein kinase-like (PK-like) 116 411 IPR011009 -
Stsc242037g00006 553 MobiDBLite consensus disorder prediction 415 455 - -
Stsc242037g00006 553 Gene3D Phosphorylase Kinase; domain 1 108 203 - -
Stsc242037g00006 553 MobiDBLite consensus disorder prediction 46 79 - -
Stsc242037g00006 553 Pfam Protein kinase domain 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242037g00006 553 FunFam probable serine/threonine-protein kinase At1g54610 204 445 - -
Stsc242037g00006 553 MobiDBLite consensus disorder prediction 479 496 - -
Stsc242037g00006 553 MobiDBLite consensus disorder prediction 479 507 - -
Stsc242037g00006 553 FunFam probable serine/threonine-protein kinase At1g54610 108 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242037g00006 Stsc-Chr242037 20949 27203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242037g00006 113 443 Core Cell Cycle Gene Families AT5G10270 51.009 4.07e-117 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc242037g00006 Pkinase 3.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242037g00006 K08819 - gmx:100817289 915.22