Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242035g00007 ATGGGACTAGCACTGGCTGTGACAGCTACTCTAGTGCTAGTAATAGTGACGCTCTACTACAAGAAATGGAAGAAGCAAAATCCAAACCTTCCACTGGTTGATGCCTTTTTTGAGAGTCATTACCTCCTCCAAATCAAGAGGTATAGTTATTCTGATATGAAGAAAGTGACTAATTCCTTCAAAAACAAACTAGGCCAAGGGGGATTTGGCAGTGTATACAAAGGACAATTACAGGACGGACGTCATGTTGCAGTGAAGATCCTAAGTGAATTTAATGGTGATGGTCAGGAGTTTATTAACGAAGTTGCAAGTATGAGCAGAACTTCCCATGTTAACATCGTTTCTCTTCTTGGCTTCTGCTTTGAAGGATATAAGCGAGCTTTAGTTTACGAATTTATGTCTAATGGGTCTCTAGAGAAGTTAATCTATGAAGATAATGCTGTGATAGGGGATCGCCAATTGGATTGCCAAACTTTATATGATATTGCAATTGGTGTTGCCAGAGGACTTGAATATTTGCACAAGGGCTGTAATACTAGAATCTTGCATTTTGACATAAAGCCTCATAACATTCTGTTGGATGAAAATTTCTGTCCCAAAATTTCAGACTTCGGACTTGCAAAAGTTTGCACAAGAAAAGAAAGTATGGTATCGATATTTGGTGCCAGAGGAACTGCAGGCTATATTGCCCCCGAGGTATTTTCTAGAAGCTTTGGTGTGGTGTCACATAAGTCAGATGTTTACAGTTATGGAATGATGGTCTTAGAAATGGTTGGAAGAAGAAAGAATATCAAGCTTGAAGTTGATGCATCGAGTGAGATATATTTCCCTCGTTGGATATACAATCAGCTTGTGTCAAATCAGGAGCTTGATCTGCAAAATATAAGAAATGAATGTGATAATGAGATGGTCCGAAAGATGACAATAGTAAGTTTATGGTGCATTCAAACCAACCCTTCAACTCGACCATCAATTAGTAAGGTGGTGGAAATGTTGGAAGGAAGAGAAGAGTTGTTGCAATTGCCTCCTAAACCATATTGGTTTTCTCCTTCAACTTCTCCCTGA 1065 0.3906 MGLALAVTATLVLVIVTLYYKKWKKQNPNLPLVDAFFESHYLLQIKRYSYSDMKKVTNSFKNKLGQGGFGSVYKGQLQDGRHVAVKILSEFNGDGQEFINEVASMSRTSHVNIVSLLGFCFEGYKRALVYEFMSNGSLEKLIYEDNAVIGDRQLDCQTLYDIAIGVARGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKVCTRKESMVSIFGARGTAGYIAPEVFSRSFGVVSHKSDVYSYGMMVLEMVGRRKNIKLEVDASSEIYFPRWIYNQLVSNQELDLQNIRNECDNEMVRKMTIVSLWCIQTNPSTRPSISKVVEMLEGREELLQLPPKPYWFSPSTSP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242035g00007 354 Gene3D Transferase(Phosphotransferase) domain 1 133 344 - -
Stsc242035g00007 354 FunFam PR5-like receptor kinase 133 344 - -
Stsc242035g00007 354 FunFam serine/threonine-protein kinase PBS1-like 35 132 - -
Stsc242035g00007 354 Gene3D Phosphorylase Kinase; domain 1 35 132 - -
Stsc242035g00007 354 ProSiteProfiles Protein kinase domain profile. 58 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242035g00007 354 ProSitePatterns Protein kinases ATP-binding region signature. 64 86 IPR017441 GO:0005524
Stsc242035g00007 354 SUPERFAMILY Protein kinase-like (PK-like) 38 334 IPR011009 -
Stsc242035g00007 354 SMART serkin_6 58 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242035g00007 354 Pfam Protein kinase domain 61 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242035g00007 354 PANTHER RUST RESISTANCE KINASE LR10-RELATED 43 349 IPR045874 GO:0004672
Stsc242035g00007 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242035g00007 Stsc-Chr242035 32554 33800 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242035g00007 9 345 Receptor kinase-like Gene Family AT5G38260 55.102 5.45e-128 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc242035g00007 Pkinase 9.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242035g00007 - - ahf:112712060 609.757