Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242035g00006 ATGAAGATGGTTTCATCATCAATGATGCATGATGTGTTTACCTCTCTCTTGCTCTCATTCTTATTCTTCTTGCTTTCATGCAACAACAAGAGTGTATTGGGCTGTCCACCTTCAATCCCATGCGGAGATCTCGGCGATCTGCGTTTCCCGTTCACCAGCAGACCCCACTCGGAATGCGGCCTCCTCGTCATAGATGGCTGCGAAGACGACCCAGGCGCCACTAAAAGCATCCAGAACAACAACCGCTGGTTCGATATCCTCAACGGAAGCCTCACCCAGTCAACCATCACCGTCAGAGACGACGGTTCAGTCCTTTCTCAATCTTCAATCACAATCAGAGACGACAATCTCTATTCTCGCTTGTCTTCAAGAAGCTGCGAGGCTTTGGGATATGACTCTTCCAATACATTCAGAATCGACACACCTTTGGCTTCTTCTCAGGTGAAGTACTCTGCAAGCCTTCTCAAATGCAAACACACCATCGATCCAAGGCCTCCGTATGTTCTTCCAAACTCTACAGCATGTGGAATTGGAAACGACACGTTCTACGGAGTCAACACGTCCAACTTATTATTCAGCTACAACAAAAACAACGGGATCAAAGGGTGTTCCTTCATTCAGCTTCCACTGGGTGGACCCCTTGTTGTTCTTCAAGATCCCAATACTCTGCTGAGTTCCCTCACTGCTGACATCCCCATTCAGATAACACTGTCTCCCAATTGTTCTCATTGTAACATTGCTTATGGAGGCCTATGCAGAATTGACAACTCCGGCAGGTTTTACTGTCACACACCTGGGAAAACTAGAAGGACGATTATAATAGCAGTTTCTACTGTGGCTGGAGCATTAGGAGCTTTCATGGTGTTGGCTTGGTACTTCAGAAGATACTTTTACAATAAAGAAAACCCAACCCACCAAATAATTGAGGCATTCCTGAAAAATCATGGTCACCTTGCAGCTAAAAGGTTCAGTTATTTAGAGGTAAAGAAGGCAACCAACTCCTTCAAAGACAAACTGGGTAAAGGAGGCTATGGTAGCGTATACAAAGGGAAGTTATCTGATGGAACCCTTGTGGCAGTAAAGGTTTTAAGTGAATCAAAAGGTAATGGTGAAGAATTTATCAATGAAGTTGCTAGCATAAGTGTGACTTCTCATGTTAACATTGTTGAATTATTGGGATTCTGTTTGGAAGAGACTAAAAGAGCTTTAATATATAAGTATATGCCTAATGGATCAGTTGAAAAATTCATTTATGAAGCCAGAGATTCAAAGAAGTTCAATCCACACTTGACTTGCAAAACAATATATAAGATTGCAATTGGTGTTGCTCGAGGGTTAGACTATTTGCACAAGGGGTGTAACAGTAAAATTGTGCATTTTGATATCAAACCTCACAATATCTTGTTAGACGAAGACTTTTGTCCGAAAATTTCTGACTTCGGGCTTGCAAAAATATGCATGGAAAAAGAGAGCATTCTGTCATTAATGATTGCTAGAGGAACTATAGGGTATATTGCACCCGAAGTATTTTCTAGAAATTTTGGTGAGGTGTCTCATAAATCTGATGTATATAGTTATGGAATGATGGTTCTAGAAATGATTGGAGAAAGAAAGAATATGAACATTGTAGATGAATCTTCAAGTGAAATATATTTTCCTCATTGGATTTACAAGCGTCTTGAGCAGAATCAAGAAGCTGAATTGAGATGTATCAAGAATGAAATTGATAAAGAGACCATACAAAAGATGATAGTAGTGAGCTTATGGTGCATACAGACTGATCCATCAAATAGGCCAACAATGAGCAAGGTGGTGGATATGATGGAATCAAGCTTTGAGTCTCTACAAATGCCACCAAAACCTTATCTATGTTCACCTCCTGGATCGCAGCTGCTAGACTCCACAAATTCGTCCCTCTCAAAATTTAAGTCATTATGA 1938 0.4097 MKMVSSSMMHDVFTSLLLSFLFFLLSCNNKSVLGCPPSIPCGDLGDLRFPFTSRPHSECGLLVIDGCEDDPGATKSIQNNNRWFDILNGSLTQSTITVRDDGSVLSQSSITIRDDNLYSRLSSRSCEALGYDSSNTFRIDTPLASSQVKYSASLLKCKHTIDPRPPYVLPNSTACGIGNDTFYGVNTSNLLFSYNKNNGIKGCSFIQLPLGGPLVVLQDPNTLLSSLTADIPIQITLSPNCSHCNIAYGGLCRIDNSGRFYCHTPGKTRRTIIIAVSTVAGALGAFMVLAWYFRRYFYNKENPTHQIIEAFLKNHGHLAAKRFSYLEVKKATNSFKDKLGKGGYGSVYKGKLSDGTLVAVKVLSESKGNGEEFINEVASISVTSHVNIVELLGFCLEETKRALIYKYMPNGSVEKFIYEARDSKKFNPHLTCKTIYKIAIGVARGLDYLHKGCNSKIVHFDIKPHNILLDEDFCPKISDFGLAKICMEKESILSLMIARGTIGYIAPEVFSRNFGEVSHKSDVYSYGMMVLEMIGERKNMNIVDESSSEIYFPHWIYKRLEQNQEAELRCIKNEIDKETIQKMIVVSLWCIQTDPSNRPTMSKVVDMMESSFESLQMPPKPYLCSPPGSQLLDSTNSSLSKFKSL 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242035g00006 645 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Stsc242035g00006 645 Coils Coil 561 581 - -
Stsc242035g00006 645 SMART serkin_6 333 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242035g00006 645 ProSiteProfiles Protein kinase domain profile. 333 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242035g00006 645 FunFam PR5-like receptor kinase 408 620 - -
Stsc242035g00006 645 Gene3D Phosphorylase Kinase; domain 1 309 407 - -
Stsc242035g00006 645 Pfam Protein kinase domain 336 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242035g00006 645 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Stsc242035g00006 645 Gene3D Transferase(Phosphotransferase) domain 1 408 617 - -
Stsc242035g00006 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Stsc242035g00006 645 SUPERFAMILY Protein kinase-like (PK-like) 317 608 IPR011009 -
Stsc242035g00006 645 FunFam serine/threonine-protein kinase PBS1-like 304 407 - -
Stsc242035g00006 645 PANTHER RUST RESISTANCE KINASE LR10-RELATED 304 629 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242035g00006 Stsc-Chr242035 24850 28738 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242035g00006 230 621 Receptor kinase-like Gene Family AT5G38260 50.614 3.07e-124 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc242035g00006 Pkinase 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242035g00006 - - gmx:100785979 718.383