Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242035g00004 ATGGTGGCAGCAACAACTCATCTCGTTGCTCACGCTACCTTCTTCCTCTCTCTGGTTTTCCAAATGCTGCTTCTGGCTAGCGGCTCTAACAGCCCAGATATGGAGGCTCTTTTGGCCTTCAAAGCTGCTTCAGACGCCTCGGAGAAGCTCGCCACTTGGAACAACAGCACCAACGCTTGCAGCTGGGACGGTGTCTCTTGCATCAACAACAGAGTCACGCGACTCGTTCTGGAGAACCTCGACCTCCAAGGTTCCATTCAACCCTTAACTTCCCTCACTCAACTCCGAGTTCTCAGCCTCAAGCGAAACCGTTTCTCCGGAGCCCTTCCCACTTTCTCCAACTTCACCGCCCTCAAGCTTCTCTTCCTCTCTTACAACCACTTCTCCGGTGAGTTTCCACCTACATTGACCTCCCTCTTCCGCCTCTATCGTCTCGATCTATCCCACAACAACTTCTCCGGCGAGATTCCGGCCACAGTAAGCAACTTAGCACACCTTCTCACTCTCCGTCTCGAGGGGAACCATTTCTCCGGCTACATTCCCGGCGTCAACCTCCCAAACCTGCAAGACTTCAACGTCTCCGGGAACCTCCTCTCCGGCGAGATACCGAAGTCGCTCTCGGCTTTCCCTGTTTCCTCGTTCGGGCAAAACCCTTCTCTCTGCGGAGCCCCGATTCAGAACTGCTCTGGAGTGGTGGCTGACCCGACAAAACCCGGATCCGGAGGCGCTATTGCGTCTCCAGTGGTGCCACGTGTCGGCGCCACAACAACAGTGTCATCTTCCCCTAGCTCAATGCCAGCAAATGACGGTGAGGCAGCAACAAAACCCTCGAAAAGACATGGAAACGGAGCTTCGAAGATAAGTCCAGTGGCACTAATAGCTATAATTGTGGGCGACGTATTTGTTCTAGGCATTGTTTCATTGCTTCTATACTGCTACTTCTGGAGGAACTACTCAGCGAAGTTGAAAGAAGGGAAAGGGTCAAAGCTGTTCGAGAGCGAGAAGATTGTGTACTCTTCGAGTCCATACCCCGCACAAGGAGGAGGAGGGTTTGAGAGGGGGAAAATGGTGTTCTTCGAAGGAGAGAAGCGGTTCGAATTGGAGGACTTGCTTCGAGCGTCTGCTGAGATGCTAGGAAAAGGTGGGTTCGGAACGGCGTACAAAGCGGTTCTTGATGATGGGAACGTTGTTGCGGTGAAGAGGCTGAAAGATGCGCAGATTGGAGGGAAGAGAGAATTCGAGCAGCACATGGAGCTTCTTGGAAGGTTGAGGCACCAAAATATAGTGAGCTTGAGAGCTTACTATTTTGCGAGGGATGAGAAGTTGTTGGTCTACGATTACATGCCCAATGGAAGCTTGTTCTGGCTCCTTCACGGGAACCGAGGACCGGGGAGAACCCCACTGGACTGGACTACTCGGCTCAAGATAGCAGCTGGAGCGGCGCGTGGCGTCGCCTTCATTCACAACTCGTGTAAATCCCTCAGGCTCAACCACGGTAACATCAAATCCACCAACATTCTCTTAGACAAGCAGGGAAACGCTCGGGTATCAGATTATGGGCTCTCCGTGTTCGCGGGCCCAGGCCCATCACCATCTGGTGTCAGATCCAACGGCTATCGTGCTCCCGAGGTGTCACCCGACGGTCGAAAACAGTCCCAAAAGTCTGACGTGTATTCGTTGGGTGTATTCTTGCTTGAGTTGCTGACGGGGAAGTGTCCCTCGGCGGTTGAGGGTGGTGGGCCCGCGGTGGACCTGCCCAGGTGGGTCCAGTCCGTTGTGAGGGAAGAATGGACCGCTGAGGTATTTGATTTGGAGTTGATGAGGTACAAGGACATTGAAGAGGAGATGGTTGGGTTGTTGCAGGTTGCTATGGCGTGCACTGCCCCTACACCTGATCAACGGCCTAGCATGAGCCACGTGGTCAAGATGATTGAGGATTTGCGTGGGGTCCAGGTCTCACCGTGTCATGACGCGTTGGACTCTGTGTCTGAGTCACCTTCCGTCTCCGAAGATGCATGTGGTGCTAGTCAGTAA 2034 0.5354 MVAATTHLVAHATFFLSLVFQMLLLASGSNSPDMEALLAFKAASDASEKLATWNNSTNACSWDGVSCINNRVTRLVLENLDLQGSIQPLTSLTQLRVLSLKRNRFSGALPTFSNFTALKLLFLSYNHFSGEFPPTLTSLFRLYRLDLSHNNFSGEIPATVSNLAHLLTLRLEGNHFSGYIPGVNLPNLQDFNVSGNLLSGEIPKSLSAFPVSSFGQNPSLCGAPIQNCSGVVADPTKPGSGGAIASPVVPRVGATTTVSSSPSSMPANDGEAATKPSKRHGNGASKISPVALIAIIVGDVFVLGIVSLLLYCYFWRNYSAKLKEGKGSKLFESEKIVYSSSPYPAQGGGGFERGKMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQIGGKREFEQHMELLGRLRHQNIVSLRAYYFARDEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSLRLNHGNIKSTNILLDKQGNARVSDYGLSVFAGPGPSPSGVRSNGYRAPEVSPDGRKQSQKSDVYSLGVFLLELLTGKCPSAVEGGGPAVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQVAMACTAPTPDQRPSMSHVVKMIEDLRGVQVSPCHDALDSVSESPSVSEDACGASQ 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242035g00004 677 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Stsc242035g00004 677 MobiDBLite consensus disorder prediction 527 553 - -
Stsc242035g00004 677 FunFam Leucine-rich repeat receptor-like protein kinase 30 182 - -
Stsc242035g00004 677 ProSitePatterns Protein kinases ATP-binding region signature. 378 400 IPR017441 GO:0005524
Stsc242035g00004 677 Gene3D Ribonuclease Inhibitor 26 89 IPR032675 -
Stsc242035g00004 677 Gene3D Ribonuclease Inhibitor 90 233 IPR032675 -
Stsc242035g00004 677 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 20 649 IPR046959 -
Stsc242035g00004 677 MobiDBLite consensus disorder prediction 254 282 - -
Stsc242035g00004 677 Pfam Protein kinase domain 376 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242035g00004 677 MobiDBLite consensus disorder prediction 254 270 - -
Stsc242035g00004 677 SUPERFAMILY Protein kinase-like (PK-like) 376 644 IPR011009 -
Stsc242035g00004 677 Gene3D Phosphorylase Kinase; domain 1 352 447 - -
Stsc242035g00004 677 CDD STKc_IRAK 378 647 - -
Stsc242035g00004 677 Gene3D Transferase(Phosphotransferase) domain 1 448 660 - -
Stsc242035g00004 677 FunFam pollen receptor-like kinase 1 345 447 - -
Stsc242035g00004 677 SUPERFAMILY L domain-like 52 222 - -
Stsc242035g00004 677 ProSiteProfiles Protein kinase domain profile. 372 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242035g00004 677 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 448 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242035g00004 Stsc-Chr242035 16031 19382 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242035g00004 33 676 Receptor kinase-like Gene Family AT1G68400 66.514 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc242035g00004 Pkinase 9.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242035g00004 - - gmx:100779158 1051.58