Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242034g00003 ATGGAATCTCCAGAACCTTCGAAGAACAATGCCACTTCTTCAGCCTCCACAATCAGCGCCGTCGCCGTCAATGATTCTCCTCAAGTACAAGAATCACCTTTTTTCAGGTTTGTAAACAACTTATCTCCTATAAAGCAACCTGCCAAGACTTCTCATGTGGCACAAGGCTTTGTCGGACTCAATTCTCCGCCTCTTGTGTTCACATCGCCACGTATTAGTTCTCACCGTGAAACACACTTATTGGAAAGACCTTCATGTGCTCCGTCATCTAGTCAAGTAAAGTCTCAAAGTGACAATAGAGGCAAGACAATTGAAGCTCCTGGTGATTCTGCAAATTCAACTGTTGATCTGCCATCTGCAGGGGAGTTTATAGCTGACACTGTGAAGGATTTTGATGTCAGAAATAATGCAACAAGCCAACACAGCAGTCCGCCACCATCTGTTGATAAATATCTGGTTGATCCTGCGGATATTGATCAAATGTACTCTGTCAACCCAGATGAAAAACAACCTAAAGATACCGAATCATCGCTAAGTAACTTAGCTCAATCAAAGAAAAGTATATCAGAAGTTGACAGAAAAGATGATCCTCATGATAAAGCAGATAAACCTTTAGAGGAACTTGATAAGGCTCAACCAGGGCCAGCATATGTTGAAGGACAGGGTCAAATATCAGGGGAGAAAAATGACGTTTTAATGGATTTGCAAAAGCGCATGAAGGATCATAATGACTGTACGTCTCAGTTGCCTCCGGAACAGACTCTGCAGGATGTTAAAGATTGGGAAGATTGTGATGAGATGGTCTCAACCTCACATGTAGGTGCTGAGAACGTGTCACAAGATGCGTCTGAGGCTACCCTAAAGTATCATGGCCTTCGTAGGCGTTGCCTACAATTTGAGGAGGCTGCATCCAATGCTCTTGGAAGTGGTAAATCTTGTATGAAATCAAGTGCTCCTCCAAGCAAAATAAAAATGGTCAAGCTCTGTGAACCTGTCACTTCTTCTGTGTTTCCTCAAAAATGTAGTGGAAACTCAACTGTGACATGTCCCAAGCCATCAGGTATTGGGTTGCATTTGAATAGCATTGTAAATGCTATGCCTCCTGGTTGTGGTGCAACTACGGGTATGAGATCATCAAATAATTTACAAGGGATGAAATCCGCATCGATTAGCATACATAAAGTGGAGAACATGAAGGGATGCCTAATTTTGTCAAATATAGACAGGCAATCATTAGTTGATACTGGAAATGAGAGCCAAGCCAACGATTCCTCACTAGCTGTAGATTCTTTCATTTCTGGGTCTCCTAGCCTTACAGAACCTGTTGCTTTATGTACTGAAAGTCTGCATGATAAGAGGAAACTAAGCCCTACAGATGATGGAAATATTGAGGAATCAAAGCAACCTAGCCCCATCAAGAAAAAGAAGAGAGCATCAAGCAACAGTGATGATAATGGTTGTAAAAGGTGCAACTGTAAAAAGAGTAAATGTTTGAAACTACATGAGCATGAAAATAAAGTTCTTGAAACAAGGAAACAAATTGAATCCCGTAATCCTCTTGCATTTCTTCCCAAGATTGTTCCTCAATCTACTGATCTTCCATCAACTAATATGGAGGAAGCAAATTTGATGACACCTTCATCAGCTAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAATGTGTCAGAAAAAATATTGCGAATGTTTTCAGGTTGGTGTTGGATGCTCTAGTGGATGCCGATGTGAGGGATGTAAGAATATCTATGGCACAAAAGAAGATTATGTTGCAAGGGATCATGTTTCCAATAAAGAAAGGATGATTACCAGGATTGCAAACGAACCAGATGGTGCTTTCCTCAACAAACTGGAAATGGTGGCAAGCAAGTCAGATTTGTATGACGTGCCCCATCTCTCACCTTTAACACCGTCATTGCAATGCTCTGACCAAGGAAAGGAGGCTGCAAAATTCCAACTTCATTCTGGACAGCATCTACCCGCCTCTGAAACTGATGTTGATATGCTTCCATCAAGTGAAAATTATAAGTCTCTGGAGAACTCGCACAGTATTATCACAAATCCGGAACCAAATGAGACGTTGGAAACTGCTTCCTATGATTGGCAAGTGGATTGCGGCGATGTAATGGATCAATCATCACCATGTGATTTAGTTGCCAACATACTTCAGGTTACTCCCCTGTCAAATCCTGAGTCAATGTCTAGTGCTTCATTGTTCACATCTAGTACAAAGGAGTGCGGAAACATTCCACAATCCCAGCCGCAAGGACGCATTCGCCTAATATCTGGGAGCTCTCTTCGTTGGCGTGGTTCACCAAATACCCCAAGGGCTAGATTGGGTGTAAAACATCTGCAGTCTCTTGAGTCTGAAAGCAGGCTTTTTGACATAATGGAAGATGAAACGCCAGATGTATTGAAGGAAAGTTTAACACCCACCAAGTCTGTGAAGGCAAATTCCCCAAACCAGAAGCGAGTTTCTCCTCCCCATGGTCATCTACGCGGACTTGGTTCAAGCTCCTCCGGAGGCTTTAGAACTGGCAGGAAATTTATACTGAAATCTGTCCCTTCCTTCCCCCCATTGACACCTTGTGTTGATTCCAAAGGAAATAGTTCCAAAGGTAATAGCAGTGAGGATTTAGGTAACAATGCCAAGTAA 2673 0.4235 MESPEPSKNNATSSASTISAVAVNDSPQVQESPFFRFVNNLSPIKQPAKTSHVAQGFVGLNSPPLVFTSPRISSHRETHLLERPSCAPSSSQVKSQSDNRGKTIEAPGDSANSTVDLPSAGEFIADTVKDFDVRNNATSQHSSPPPSVDKYLVDPADIDQMYSVNPDEKQPKDTESSLSNLAQSKKSISEVDRKDDPHDKADKPLEELDKAQPGPAYVEGQGQISGEKNDVLMDLQKRMKDHNDCTSQLPPEQTLQDVKDWEDCDEMVSTSHVGAENVSQDASEATLKYHGLRRRCLQFEEAASNALGSGKSCMKSSAPPSKIKMVKLCEPVTSSVFPQKCSGNSTVTCPKPSGIGLHLNSIVNAMPPGCGATTGMRSSNNLQGMKSASISIHKVENMKGCLILSNIDRQSLVDTGNESQANDSSLAVDSFISGSPSLTEPVALCTESLHDKRKLSPTDDGNIEESKQPSPIKKKKRASSNSDDNGCKRCNCKKSKCLKLHEHENKVLETRKQIESRNPLAFLPKIVPQSTDLPSTNMEEANLMTPSSARHKRGCNCKRSMCQKKYCECFQVGVGCSSGCRCEGCKNIYGTKEDYVARDHVSNKERMITRIANEPDGAFLNKLEMVASKSDLYDVPHLSPLTPSLQCSDQGKEAAKFQLHSGQHLPASETDVDMLPSSENYKSLENSHSIITNPEPNETLETASYDWQVDCGDVMDQSSPCDLVANILQVTPLSNPESMSSASLFTSSTKECGNIPQSQPQGRIRLISGSSLRWRGSPNTPRARLGVKHLQSLESESRLFDIMEDETPDVLKESLTPTKSVKANSPNQKRVSPPHGHLRGLGSSSSGGFRTGRKFILKSVPSFPPLTPCVDSKGNSSKGNSSEDLGNNAK 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242034g00003 890 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 502 873 IPR044522 GO:0003700
Stsc242034g00003 890 MobiDBLite consensus disorder prediction 187 209 - -
Stsc242034g00003 890 MobiDBLite consensus disorder prediction 68 118 - -
Stsc242034g00003 890 MobiDBLite consensus disorder prediction 84 117 - -
Stsc242034g00003 890 ProSiteProfiles CRC domain profile. 466 590 IPR005172 -
Stsc242034g00003 890 MobiDBLite consensus disorder prediction 813 890 - -
Stsc242034g00003 890 MobiDBLite consensus disorder prediction 813 831 - -
Stsc242034g00003 890 MobiDBLite consensus disorder prediction 134 226 - -
Stsc242034g00003 890 SMART CXC_2 550 591 IPR033467 -
Stsc242034g00003 890 MobiDBLite consensus disorder prediction 450 486 - -
Stsc242034g00003 890 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 553 587 IPR005172 -
Stsc242034g00003 890 MobiDBLite consensus disorder prediction 869 890 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242034g00003 Stsc-Chr242034 24378 29919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242034g00003 277 593 CPP Transcription Factor Family AT3G22760 34.278 3.90e-39 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc242034g00003 TCR 6.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242034g00003 K21776 - gmx:547664 778.474