Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242034g00002 ATGGCAAAGAAGAAGAATCCCCTTGTGTATATGGATGTGTCTATAGATGGAGATCCCGTTGAGAGGATGGTTTTTGAGCTTTTCTATGACATTGCTCCAAAGACTTCAGAAAATTTTCGTGCACTATGTACAGGAGAAAAAGGAGTTAGCCCAAATACTGGGAAATCACTACACTACAAGGGTTCTTTCTTCCATCACATTTTGAAAGGCTCTGTTGTGCGGGGTGGTGATTTTGTCAATCGAAATGGGACTGGTGGGGAAAGCATATATGGTTCGAAGTTTCCAGATGAGTCACCTAGGCTGAAGCATGATTCTCCAGGCCTTTTATCAATGGCAATTGCTGATCGTGAAACACTGGGTTCTCATTTTATCATCACTTTGAAGGCTGATCACCATCTTGATAGAAAACATGTAGTCTTTGGCAAGATTGTCCAAGGGCATAATGTGTTGAAGAAAATTGAAGATACTGGCGATGAAGAAGGACATCCAACTGTAACTGTTAAAATAATTAATTGTGGTGAATTCAGTGACGATGGAAAGAAGATAAATAAATCTGAAGCCAATAGTCAAGAAGTACAGCGTAAGGGAAAGCACAAAAAATCTTCAAGAGACCGAAGAAAAAGGAGAAAATACTACTCATCAGATTCTGAGAGCTCTGATTCAGACATGGAATCTTCGGAAAGCGATAGTGATTCTGAGTCAGATGTTTCTTCATCATCTTACACTAGTTCCTCTAGTGATGACAGGCGAAGAAAGAGAAAGAGGTCTTCGAGGAAAGATAAACATAGACGTGGAAAACGAAGAGATAAACGCCGAGATAAGAGGCGCAGGAAACGTGACAAGAGGTCAAAACGAAAATCAAAAAGGGGATCTGGTAGTCTAACTGATTCAGATAGTGGAACTAAAAGTGACAATAGCCTTGATAGCAGAAGTCAAGCTGGTGGGAAAGATCAGAAGCATAAAGATCATGTGCAGAAAAATGCTGAAGATCAGTCTCCATTAAATGTGGAGAATGAATTGCCTCTTGAACATCAGAAAAAACGGGAGGAACTGGATATGGTAGAGGAAGCACTACCAAAGGAAAATGGAGCGCGGCGCAGCAATGGCATAGGAGCCAACCATCGATCTGACAGAAGTGAAGAAAGGCAGCCTGATGTGGTTGATGATCATCCTGGAAAATCTAGGAGTCGAAGCATTAGTCCTAAGCGAGCTGTGAGTAAGAGTATGAGTCCCAAGGGTGGGAACCGAAGCCCAAGTCCAGACAAGAGTTTGAGTAGAAGTCCAAGTCGGAGTAGAAGCCCTCCTGCTGCATCAAGGCGGAGTTTGAGCATGAGTCCTGTTAGAAGCATAAGCAGAAGTCCTGTTAGACAGACAAGCAGAAGTCCAGACCGAAGCATCAGCAGAAGCCCAGTGAGGGTTAGGAAGGGGAGAAGTGTCAGCAGAAGCCCCATCAGGACTCGCAACCATAGAAGTATTAGTAGAAGCTCAGGGAGAATCCGCAATCGCAGTGTCAGTAGAAGTCCTGTGAGAACCCGTGATCGCAGAAGTATCAGTAGAAGCCCTGTGAGAACCCGTGATCGCAGAAGTATCAGTAGAAGTCCTGTGAGAGCGCGTGATCATGGAAGTGTCAGCCGGAGCCCTGTGAGATCCCATCCTCGCAGTCATCGTAGCAGGAGTTCTCCTAGACCACCATCACGAAGAACAATCAGTAGGAGCCCTGTGCGAGTGTCAAGAAAGAGCATAAGCCGGAGTCCAGTTAGGTCACCTGCCAGAAGCTTAAGCAGAAGCTCTGGTAGGGTTCCTTTGGGAAGCGTTAGTAGAAGCCCCGTCAGACCCCCCAGTAGAAGTGATCGCCGCAGCTATTCTAGGAGTCGCAGCCCTGTCCGTAGGATAAGGACACCTCGTGGTAGGAGTGTTTCGAGAAGTGTCTCACCTGATGCTTCACCAAAGCGAATCAGAAGGGGAAGAGGTTTTAGTGAACGATATTCTTATGCTAGAAGGTATAGAACCCCTTCTCGTTCTCCTGTGAGGTCATACCGCTACAATGGGAGAAGTGACCGTGACAGATACTCAGGTTATAGGAGGTATTCCCCCAGACGTTACAGGAGCCCACCGTCACGTGCAAGAACTCCCCCAAGATACCGAGGCAGGAGGAGCAGGACACCTGTATCACGCAGCCCTCGTTACCGCAGTCGACGATATAGCAGAAGCCGTAGCCCTATTCGTAGCCGTTCGCCAGTTGAGCCATATCGAGCTCGTGTCTCTCCTCGGGTGGAGAGGCGCATGTCCTCATCTCAGAGCAGGAGTCCATCAAGATCAAGGTCTTCTGTAGAATCGCAATCTCCACGAAAAGCAAGCAGAATCAACAGGTCAAGATCATCATCCGGAAGCCCAAATGGAAAGAAAGGCCTAGTCTCTTATGAAGATGGTTCTCCTGACTCAAGCCCGAGGTGA 2454 0.4678 MAKKKNPLVYMDVSIDGDPVERMVFELFYDIAPKTSENFRALCTGEKGVSPNTGKSLHYKGSFFHHILKGSVVRGGDFVNRNGTGGESIYGSKFPDESPRLKHDSPGLLSMAIADRETLGSHFIITLKADHHLDRKHVVFGKIVQGHNVLKKIEDTGDEEGHPTVTVKIINCGEFSDDGKKINKSEANSQEVQRKGKHKKSSRDRRKRRKYYSSDSESSDSDMESSESDSDSESDVSSSSYTSSSSDDRRRKRKRSSRKDKHRRGKRRDKRRDKRRRKRDKRSKRKSKRGSGSLTDSDSGTKSDNSLDSRSQAGGKDQKHKDHVQKNAEDQSPLNVENELPLEHQKKREELDMVEEALPKENGARRSNGIGANHRSDRSEERQPDVVDDHPGKSRSRSISPKRAVSKSMSPKGGNRSPSPDKSLSRSPSRSRSPPAASRRSLSMSPVRSISRSPVRQTSRSPDRSISRSPVRVRKGRSVSRSPIRTRNHRSISRSSGRIRNRSVSRSPVRTRDRRSISRSPVRTRDRRSISRSPVRARDHGSVSRSPVRSHPRSHRSRSSPRPPSRRTISRSPVRVSRKSISRSPVRSPARSLSRSSGRVPLGSVSRSPVRPPSRSDRRSYSRSRSPVRRIRTPRGRSVSRSVSPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRSDRDRYSGYRRYSPRRYRSPPSRARTPPRYRGRRSRTPVSRSPRYRSRRYSRSRSPIRSRSPVEPYRARVSPRVERRMSSSQSRSPSRSRSSVESQSPRKASRINRSRSSSGSPNGKKGLVSYEDGSPDSSPR 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242034g00002 817 MobiDBLite consensus disorder prediction 340 362 - -
Stsc242034g00002 817 MobiDBLite consensus disorder prediction 759 801 - -
Stsc242034g00002 817 MobiDBLite consensus disorder prediction 563 603 - -
Stsc242034g00002 817 MobiDBLite consensus disorder prediction 313 328 - -
Stsc242034g00002 817 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 173 IPR002130 GO:0000413|GO:0003755
Stsc242034g00002 817 MobiDBLite consensus disorder prediction 251 288 - -
Stsc242034g00002 817 MobiDBLite consensus disorder prediction 176 817 - -
Stsc242034g00002 817 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Stsc242034g00002 817 MobiDBLite consensus disorder prediction 680 695 - -
Stsc242034g00002 817 MobiDBLite consensus disorder prediction 506 546 - -
Stsc242034g00002 817 MobiDBLite consensus disorder prediction 293 312 - -
Stsc242034g00002 817 MobiDBLite consensus disorder prediction 371 396 - -
Stsc242034g00002 817 MobiDBLite consensus disorder prediction 399 466 - -
Stsc242034g00002 817 MobiDBLite consensus disorder prediction 176 197 - -
Stsc242034g00002 817 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 174 - -
Stsc242034g00002 817 MobiDBLite consensus disorder prediction 474 496 - -
Stsc242034g00002 817 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Stsc242034g00002 817 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Stsc242034g00002 817 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Stsc242034g00002 817 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Stsc242034g00002 817 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Stsc242034g00002 817 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 182 - -
Stsc242034g00002 817 MobiDBLite consensus disorder prediction 711 739 - -
Stsc242034g00002 817 SUPERFAMILY Cyclophilin-like 4 177 IPR029000 -
Stsc242034g00002 817 MobiDBLite consensus disorder prediction 647 667 - -
Stsc242034g00002 817 Gene3D - 1 176 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242034g00002 Stsc-Chr242034 14742 22592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242034g00002 26 177 U-box Gene Family AT5G67530 38.312 6.18e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242034g00002 K09566 - rvl:131312516 426.402